General information
PDB ID 5LJ3
Title STRUCTURE OF THE CORE OF THE YEAST SPLICEOSOME IMMEDIATELY AFTER BRANCHING
PDB header SPLICING
Date 2016-07-17
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.8
Kind rna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5lj3.pdb ADFCGHJKLMNOPRSTbdefghjWYklmnpqrx UEIZV 0
Biounits:
5lj3.pdb1.pdb ADFCGHJKLMNOPRSTbdefghjWYklmnpqrx UEIZV 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PROCN Domain P33334_470-874 1.8e-218 1 No_clan A 470 874 EIUVZ   
PRP8_domainIV Domain P33334_1840-2061 3.9e-119 1 No_clan A 1824 2061 IZ   
U6-snRNA_bdg Domain P33334_1514-1672 2.5e-85 1 CL0363 A 1514 1672 EZI   
PRO8NT Domain P33334_131-282 2.3e-79 1 No_clan A 131 282 UV   
U5_2-snRNA_bdg Domain P33334_1282-1415 3.2e-69 1 No_clan A 1282 1415 EUZ   
RRM_4 Domain P33334_1059-1150 2.6e-47 1 No_clan A 1059 1150 Z   
LSM Domain P40018_10-97 2.1e-22 1 CL0527 b 10 97 U   
GTP_EFTU Domain P36048_131-442 3e-36 1 CL0023 C 131 443 U   
GTP_EFTU_D2 Domain P36048_481-578 2e-18 1 CL0575 C 481 578   
EFG_C Domain P36048_856-948 1.2e-14 1 CL0437 C 856 948   
EFG_IV Domain P36048_744-854 3.1e-11 1 CL0329 C 720 854   
LSM Domain P43321_9-74 2.1e-16 1 CL0527 d 9 74 IUVZ   
LSM Domain Q12330_19-92 2e-16 1 CL0527 e 19 92 U   
LSM Domain P54999_17-83 1.8e-19 1 CL0527 f 17 83 UZ   
Cir_N Domain P53854_11-47 9e-14 1 No_clan F 11 47 IUZ   
LSM Domain P40204_5-73 3.6e-16 1 CL0527 g 5 73 IUVZ   
LSM Domain Q02260_5-97 6.1e-27 1 CL0527 h 5 97 U   
LSM Domain Q06217_37-106 1e-17 1 CL0527 j 37 106 U   
LSM Domain P40018_10-97 2.1e-22 1 CL0527 k 10 97 UZ   
G10 Domain P25337_1-155 3.9e-63 1 No_clan L 2 155 UVZ   
LSM Domain Q02260_5-97 5.4e-27 1 CL0527 l 5 97 UVZ   
Torus Domain Q12046_4-114 4.3e-33 1 CL0537 M 4 114 VZ   
LSM Domain Q06217_37-106 1e-17 1 CL0527 m 37 106 VZ   
RRM_1 Domain Q12046_149-206 3.5e-06 1 CL0221 M 149 206 V   
LSM Domain P43321_9-74 2.1e-16 1 CL0527 n 9 74 VZ   
Myb_DNA-bind_6 Domain 1.6e-12 1 CL0123 O 13 73 VZ
LSM Domain Q12330_19-92 2e-16 1 CL0527 p 19 92 UVZ   
LSM Domain P54999_17-83 1.8e-19 1 CL0527 q 17 83 Z   
LSM Domain P40204_5-73 3.6e-16 1 CL0527 r 5 73 UZ   
cwf21 Domain Q03375_66-109 2e-15 1 No_clan R 66 109   
RRM_5 Domain P40567_29-110 5.3e-10 1 CL0221 Y 28 110 Z   
DUF572 Family P28320_9-116 1.4e-41 1 No_clan D 2 115 EIUVZ   
Isy1 Family P21374_2-96 1.6e-34 1 No_clan G 1 97 IUVZ   
MA3 Family 4.7e-26 1 CL0020 H 291 398
SKIP_SNW Family P28004_104-225 3.2e-27 1 No_clan K 76 225 UVZ   
HAT Family Q12309_180-211 9.4e-07 1 CL0020 S 180 211   
WD40 Repeat Q12417_172-210 1.4e-05 1 CL0186 J 214 252 V   
WD40 Repeat Q12417_172-210 3e-05 1 CL0186 J 129 168   
WD40 Repeat Q12417_172-210 0.00025 1 CL0186 J 172 210   
WD40 Repeat Q12417_172-210 0.00056 1 CL0186 J 256 294   
LRR_9 Repeat Q08963_33-167 7.3e-13 1 CL0022 W 35 167   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5lj3.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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b (protein): 
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C (protein): 
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D (protein): 
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f (protein): 
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G (protein): 
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h (protein): 
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J (protein): 
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K (protein): 
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l (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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W (protein): 
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x (protein): 
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Y (protein): 
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E (rna): 
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I (rna): 
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U (rna): 
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V (rna): 
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Z (rna): 
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