General information
PDB ID 5LJ5
Title OVERALL STRUCTURE OF THE YEAST SPLICEOSOME IMMEDIATELY AFTER BRANCHING.
PDB header SPLICING
Date 2016-07-17
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.8
Kind rna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5lj5.pdb ABDFCGHJKLMNOPRSTbdefghjWYklmnpqrQtuvwsx UEIZV 0
Biounits:
5lj5.pdb1.pdb ABDFCGHJKLMNOPRSTbdefghjWYklmnpqrQtuvwsx UEIZV 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PROCN Domain P33334_470-874 2.1e-218 1 No_clan A 470 874 EIUVZ   
PRP8_domainIV Domain P33334_1840-2061 4.6e-119 1 No_clan A 1824 2061 IZ   
U6-snRNA_bdg Domain P33334_1514-1672 2.9e-85 1 CL0363 A 1514 1672 EZI   
PRO8NT Domain P33334_131-282 2.6e-79 1 No_clan A 131 282 UV   
U5_2-snRNA_bdg Domain P33334_1282-1415 3.7e-69 1 No_clan A 1282 1415 EUZ   
RRM_4 Domain P33334_1059-1150 2.9e-47 1 No_clan A 1059 1150 Z   
PROCT Domain P33334_2289-2395 1.5e-42 1 No_clan A 2289 2395   
DEAD Domain P32639_500-680 3.3e-28 1 CL0023 B 500 680   
LSM Domain P40018_10-97 2.1e-22 1 CL0527 b 10 97 U   
DEAD Domain P32639_1349-1520 4.9e-15 1 CL0023 B 1349 1520   
GTP_EFTU Domain P36048_131-442 3e-36 1 CL0023 C 131 443 U   
GTP_EFTU_D2 Domain P36048_481-578 2e-18 1 CL0575 C 481 578   
EFG_C Domain P36048_856-948 1.2e-14 1 CL0437 C 856 948   
EFG_IV Domain P36048_744-854 3.1e-11 1 CL0329 C 720 854   
LSM Domain P43321_9-74 2.1e-16 1 CL0527 d 9 74 IUVZ   
LSM Domain Q12330_19-92 2e-16 1 CL0527 e 19 92 U   
LSM Domain P54999_17-83 1.8e-19 1 CL0527 f 17 83 UZ   
Cir_N Domain P53854_11-47 9e-14 1 No_clan F 11 47 IUZ   
LSM Domain P40204_5-73 3.6e-16 1 CL0527 g 5 73 IUVZ   
LSM Domain Q02260_5-97 6.1e-27 1 CL0527 h 5 97 U   
LSM Domain Q06217_37-106 1e-17 1 CL0527 j 37 106 U   
LSM Domain P40018_10-97 2.1e-22 1 CL0527 k 10 97 UZ   
G10 Domain P25337_1-155 3.9e-63 1 No_clan L 2 155 UVZ   
LSM Domain Q02260_5-97 5.4e-27 1 CL0527 l 5 97 UVZ   
Torus Domain Q12046_4-114 4.6e-33 1 CL0537 M 4 114 VZ   
LSM Domain Q06217_37-106 1e-17 1 CL0527 m 37 106 VZ   
RRM_1 Domain Q12046_149-206 3.5e-06 1 CL0221 M 149 206 V   
LSM Domain P43321_9-74 2.1e-16 1 CL0527 n 9 74 VZ   
Myb_DNA-bind_6 Domain 3e-12 1 CL0123 O 13 73 VZ
LSM Domain Q12330_19-92 2e-16 1 CL0527 p 19 92 UVZ   
HA2 Domain P15938_757-845 1.2e-20 1 No_clan Q 757 845   
LSM Domain P54999_17-83 1.8e-19 1 CL0527 q 17 83 Z   
OB_NTP_bind Domain P15938_903-978 9.2e-15 1 CL0021 Q 903 978   
DEAD Domain P15938_353-516 1.8e-08 1 CL0023 Q 353 516   
LSM Domain P40204_5-73 3.6e-16 1 CL0527 r 5 73 UZ   
cwf21 Domain Q03375_66-109 2e-15 1 No_clan R 66 109   
Prp19 Domain P32523_77-139 3e-23 1 No_clan t 48 139   
U-box Domain 4.8e-05 1 CL0229 t 1 94
Prp19 Domain P32523_77-139 7e-25 1 No_clan u 51 171   
Prp19 Domain P32523_77-139 8e-25 1 No_clan v 49 139   
U-box Domain 0.00076 0 CL0229 v 1 87
Prp19 Domain P32523_77-139 9.3e-24 1 No_clan w 48 171   
U-box Domain 0.00072 0 CL0229 w 1 90
RRM_5 Domain P40567_29-110 5.3e-10 1 CL0221 Y 28 110 Z   
Sec63 Family P32639_998-1307 2.8e-77 1 No_clan B 998 1307   
Sec63 Family P32639_1847-2159 4.6e-62 1 No_clan B 1846 2159   
Helicase_C Family P32639_721-879 8.5e-08 1 CL0023 B 721 879   
DUF572 Family P28320_9-116 1.4e-41 1 No_clan D 2 115 EIUVZ   
Isy1 Family P21374_2-96 1.6e-34 1 No_clan G 1 97 IUVZ   
MA3 Family 4.7e-26 1 CL0020 H 291 398
SKIP_SNW Family P28004_104-225 3.2e-27 1 No_clan K 76 225 UVZ   
Helicase_C Family P15938_549-694 6.7e-15 1 CL0023 Q 549 694   
HAT Family Q12309_180-211 9.4e-07 1 CL0020 S 180 211   
WD40 Repeat Q12417_172-210 1.4e-05 1 CL0186 J 214 252 V   
WD40 Repeat Q12417_172-210 3e-05 1 CL0186 J 129 168   
WD40 Repeat 0.00025 1 CL0186 J 172 210
WD40 Repeat Q12417_172-210 0.00056 1 CL0186 J 256 294   
LRR_9 Repeat Q08963_33-167 7.3e-13 1 CL0022 W 35 167   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5lj5.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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b (protein): 
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C (protein): 
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d (protein): 
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e (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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j (protein): 
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k (protein): 
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L (protein): 
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M (protein): 
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n (protein): 
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O (protein): 
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p (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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t (protein): 
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u (protein): 
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v (protein): 
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W (protein): 
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x (protein): 
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Y (protein): 
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I (rna): 
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Z (rna): 
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