General information
PDB ID 5LL6
Title STRUCTURE OF THE 40S ABCE1 POST-SPLITTING COMPLEX IN RIBOSOME RECYCLING AND TRANSLATION INITIATION
PDB header RIBOSOME
Date 2016-07-26
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.9
Kind rna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5ll6.pdb PQRSTUVWXYZabcdefgh 2 0
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S8 Domain P0C0W1_5-130 5e-24 1 No_clan b 5 130 2   
ABC_tran Domain Q03195_368-496 6.8e-17 1 CL0023 h 368 496   
ABC_tran Domain Q03195_99-250 7.3e-16 1 CL0023 h 99 250 2   
Fer4 Domain Q03195_48-71 0.0000003 1 CL0344 h 48 71   
Ribosomal_S5 Domain P25443_76-140 1.2e-26 1 CL0196 R 76 140 2   
Ribosomal_S5_C Domain P25443_159-230 5.2e-24 1 CL0329 R 159 230 2   
RS4NT Domain P0CX35_3-39 1.5e-19 1 No_clan S 3 39 2   
S4 Domain P0CX35_42-90 0.000000016 1 CL0492 S 42 90 2   
S4 Domain O13516_107-153 0.0000000000033 1 CL0492 W 107 153 2   
Ribosomal_S17 Domain P0CX47_73-141 8.4e-28 1 CL0021 X 73 141 2   
Ribosomal_S13_N Domain P05756_2-60 8.1e-28 1 No_clan Y 2 60 2   
Ribosomal_S15 Domain P05756_70-148 0.0000000000000032 1 CL0600 Y 70 149 2   
Ribosomal_S21e Family P0C0V8_1-80 5.8e-40 1 No_clan a 1 80 2   
Ribosom_S12_S23 Family P0CX29_31-144 2.1e-51 1 CL0021 c 31 144 2   
Ribosomal_S24e Family P0CX31_24-102 6.2e-35 1 No_clan d 24 102 2   
Ribosomal_S26e Family P39938_2-98 3.6e-48 1 No_clan e 2 98 2   
Ribosomal_S27e Family P35997_28-82 5e-30 1 CL0167 f 28 82 2   
Ribosomal_S30 Family P0CX33_7-61 8.2e-29 1 No_clan g 3 61 2   
RLI Family Q03195_6-37 0.000000000000019 1 CL0344 h 6 37 2   
Ribosomal_S2 Family P32905_111-183 0.000000000000029 1 CL0067 P 111 183 2   
Ribosomal_S2 Family P32905_17-116 0.00000000094 1 CL0067 P 17 116 2   
Ribosomal_S3Ae Family P33442_20-221 7.6e-88 1 No_clan Q 20 221 2   
Ribosomal_S4e Family P0CX35_95-169 2.1e-38 1 No_clan S 95 169 2   
40S_S4_C Family P0CX35_212-259 3.8e-26 1 No_clan S 212 259 2   
KOW Family P0CX35_177-211 0.0000038 1 CL0107 S 177 211 2   
Ribosomal_S6e Family P0CX37_1-126 6e-58 1 No_clan T 1 126 2   
Ribosomal_S7e Family P26786_5-187 6.2e-80 1 CL0652 U 5 187 2   
Ribosomal_S8e Family P0CX39_2-184 1.8e-59 1 No_clan V 2 184 2   
Ribosomal_S17_N Family P0CX47_8-71 8.4e-32 1 No_clan X 8 71 2   
Ribosomal_S11 Family P06367_15-129 3.2e-46 1 CL0267 Z 15 133 2   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
pdb5ll6.pdb:   [ download sequences in FASTA format ]
a (protein): 
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b (protein): 
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c (protein): 
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d (protein): 
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e (protein): 
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f (protein): 
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g (protein): 
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h (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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2 (rna): 
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