General information
PDB ID 5LL6
Title STRUCTURE OF THE 40S ABCE1 POST-SPLITTING COMPLEX IN RIBOSOME RECYCLING AND TRANSLATION INITIATION
PDB header RIBOSOME
Date 2016-07-26
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.9
Kind rna
Organism SACCHAROMYCES CEREVISIAE
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CATH PDBsum HSSP PDBePISA UniProt
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Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5ll6.pdb PQRSTUVWXYZabcdefgh 2 0
Pfam domains
Name: Type: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Action:
Ribosomal_S8 Domain 5e-24 1 No_clan b 5 130 2
ABC_tran Domain 6.8e-17 1 CL0023 h 368 496
ABC_tran Domain 7.3e-16 1 CL0023 h 99 250 2
Fer4 Domain 0.0000003 1 CL0344 h 48 71
Ribosomal_S5 Domain 1.2e-26 1 CL0196 R 76 140 2
Ribosomal_S5_C Domain 5.2e-24 1 CL0329 R 159 230 2
RS4NT Domain 1.5e-19 1 No_clan S 3 39 2
S4 Domain 0.000000016 1 CL0492 S 42 90 2
S4 Domain 0.0000000000033 1 CL0492 W 107 153 2
Ribosomal_S17 Domain 8.4e-28 1 CL0021 X 73 141 2
Ribosomal_S13_N Domain 8.1e-28 1 No_clan Y 2 60 2
Ribosomal_S15 Domain 0.0000000000000032 1 CL0600 Y 70 149 2
Ribosomal_S21e Family 5.8e-40 1 No_clan a 1 80 2
Ribosom_S12_S23 Family 2.1e-51 1 CL0021 c 31 144 2
Ribosomal_S24e Family 6.2e-35 1 No_clan d 24 102 2
Ribosomal_S26e Family 3.6e-48 1 No_clan e 2 98 2
Ribosomal_S27e Family 5e-30 1 CL0167 f 28 82 2
Ribosomal_S30 Family 8.2e-29 1 No_clan g 3 61 2
RLI Family 0.000000000000019 1 CL0344 h 6 37 2
Ribosomal_S2 Family 0.000000000000029 1 CL0067 P 111 183 2
Ribosomal_S2 Family 0.00000000094 1 CL0067 P 17 116 2
Ribosomal_S3Ae Family 7.6e-88 1 No_clan Q 20 221 2
Ribosomal_S4e Family 2.1e-38 1 No_clan S 95 169 2
40S_S4_C Family 3.8e-26 1 No_clan S 212 259 2
KOW Family 0.0000038 1 CL0107 S 177 211 2
Ribosomal_S6e Family 6e-58 1 No_clan T 1 126 2
Ribosomal_S7e Family 6.2e-80 1 CL0652 U 5 187 2
Ribosomal_S8e Family 1.8e-59 1 No_clan V 2 184 2
Ribosomal_S17_N Family 8.4e-32 1 No_clan X 8 71 2
Ribosomal_S11 Family 3.2e-46 1 CL0267 Z 15 133 2
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
pdb5ll6.pdb:   [ download sequences in FASTA format ]
a (protein): 
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b (protein): 
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c (protein): 
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d (protein): 
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e (protein): 
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f (protein): 
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g (protein): 
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h (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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2 (rna): 
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