General information
PDB ID 5LUX
Title HOMEOBOX TRANSCRIPTION FACTOR CDX1 BOUND TO METHYLATED DNA
PDB header TRANSCRIPTION
Date 2016-09-12
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.23
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5lux.pdb KL ABFE 0
Biounits:
5lux.pdb1.pdb K AF 1
5lux.pdb2.pdb L BE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Homeodomain Domain P47902_155-211 3.3e-22 1 CL0123 K 155 211 AF  H-Bb H-Mj L-Bb L-Mn 
Homeodomain Domain P47902_155-211 3.1e-22 1 CL0123 L 155 211 BE  H-Bb H-Mj L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
K/L=153-215 C nuclear chromatin
K/L=153-215 C nucleus
K/L=153-215 F DNA-binding transcription activator activity, RNA polymerase II-specific
K/L=153-215 F DNA-binding transcription factor activity
K/L=153-215 F DNA-binding transcription factor activity, RNA polymerase II-specific
K/L=153-215 F methyl-CpG binding
K/L=153-215 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
K/L=153-215 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
K/L=153-215 F sequence-specific double-stranded DNA binding
K/L=153-215 F transcription regulatory region sequence-specific DNA binding
K/L=153-215 P animal organ morphogenesis
K/L=153-215 P anterior/posterior axis specification
K/L=153-215 P bone morphogenesis
K/L=153-215 P cell differentiation
K/L=153-215 P positive regulation of transcription by RNA polymerase II
K/L=153-215 P regulation of somitogenesis
K/L=153-215 P regulation of transcription by RNA polymerase II
Sequences
Download file with secondary structure created by Stride  
5lux.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
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F (dna): 
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K (protein): 
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5lux.pdb2.pdb:   [ download sequences in FASTA format ]
B (dna): 
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E (dna): 
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L (protein): 
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