General information
PDB ID 5M0R
Title CRYO-EM RECONSTRUCTION OF THE MAEDI-VISNA VIRUS (MVV) STRAND TRANSFER COMPLEX
PDB header HYDROLASE
Date 2016-10-05
Experimental method ELECTRON MICROSCOPY
Resolution (A) 8.2
Kind dna
Organism MAEDI VISNA VIRUS (STRAIN KV1772), VISNA LENTIVIRUS (STRAIN 1514), SYNTHETIC CONSTRUCT
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5m0r.pdb ABCDEFGHIJKLMNOP QRUSTV 0
Biounits:
5m0r.pdb1.pdb ABCDEFGHIJKLMNOP QRUSTV 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
rve Domain P35956_1285-1389 6.6e-20 1 CL0219 A 56 164 RSTU  H-Mn S-Bb L-Bb 
Integrase_Zn Domain P35956_1233-1269 4.1e-12 1 No_clan A 8 45   
IN_DBD_C Domain 0.00092 0 No_clan A 224 264 Q
rve Domain P35956_1285-1389 5.7e-20 1 CL0219 B 41 164   
Integrase_Zn Domain P35956_1233-1269 6.1e-12 1 No_clan B 8 60   
IN_DBD_C Domain 0.00083 0 No_clan B 224 264
rve Domain P35956_1285-1389 5.3e-20 1 CL0219 C 44 164   
Integrase_Zn Domain P35956_1233-1269 3.7e-12 1 No_clan C 8 45   
IN_DBD_C Domain 0.00085 0 No_clan C 224 264
rve Domain P35956_1285-1389 6.1e-20 1 CL0219 D 60 164   
IN_DBD_C Domain 0.00057 0 No_clan D 224 273
rve Domain P35956_1285-1389 5.8e-20 1 CL0219 E 41 164   
Integrase_Zn Domain P35956_1233-1269 6.2e-12 1 No_clan E 8 60 R  H-Bb 
IN_DBD_C Domain 0.00087 0 No_clan E 224 263
rve Domain P35956_1285-1389 6.1e-20 1 CL0219 F 47 164   
Integrase_Zn Domain P35956_1233-1269 3.9e-12 1 No_clan F 8 45   
IN_DBD_C Domain 0.00088 0 No_clan F 224 264 SU
rve Domain P35956_1285-1389 2.5e-20 1 CL0219 G 45 164   
Integrase_Zn Domain P35956_1233-1269 2.6e-12 1 No_clan G 8 45   
rve Domain P35956_1285-1389 6.2e-20 1 CL0219 H 60 164   
IN_DBD_C Domain 0.00057 0 No_clan H 224 273
rve Domain P35956_1285-1389 6.6e-20 1 CL0219 I 56 164 QRTV  H-Bb H-Mj H-Mn 
Integrase_Zn Domain P35956_1233-1269 4.1e-12 1 No_clan I 8 45   
IN_DBD_C Domain 0.00092 0 No_clan I 224 264
rve Domain P35956_1285-1389 5.7e-20 1 CL0219 J 41 164   
Integrase_Zn Domain P35956_1233-1269 6.1e-12 1 No_clan J 8 60   
IN_DBD_C Domain 0.00083 0 No_clan J 224 264
rve Domain P35956_1285-1389 5.3e-20 1 CL0219 K 44 164   
Integrase_Zn Domain P35956_1233-1269 3.7e-12 1 No_clan K 8 45   
IN_DBD_C Domain 0.00085 0 No_clan K 224 264
rve Domain P35956_1285-1389 6.1e-20 1 CL0219 L 60 164   
IN_DBD_C Domain 0.00057 0 No_clan L 224 273 QT
rve Domain P35956_1285-1389 5.8e-20 1 CL0219 M 41 164   
Integrase_Zn Domain P35956_1233-1269 6.2e-12 1 No_clan M 8 60   
IN_DBD_C Domain 0.00087 0 No_clan M 224 263
rve Domain P35956_1285-1389 6.1e-20 1 CL0219 N 47 164   
Integrase_Zn Domain P35956_1233-1269 3.9e-12 1 No_clan N 8 45   
IN_DBD_C Domain 0.00088 0 No_clan N 224 264 QV
rve Domain P35956_1285-1389 2.5e-20 1 CL0219 O 45 164   
Integrase_Zn Domain P35956_1233-1269 2.6e-12 1 No_clan O 8 45   
rve Domain P35956_1285-1389 6.2e-20 1 CL0219 P 60 164   
IN_DBD_C Domain 0.00057 0 No_clan P 224 273
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5m0r.pdb1.pdb:   [ download sequences in FASTA format ]
Q (dna): 
Click "SHOW" for view sequence
R (dna): 
Click "SHOW" for view sequence
S (dna): 
Click "SHOW" for view sequence
T (dna): 
Click "SHOW" for view sequence
U (dna): 
Click "SHOW" for view sequence
V (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
K (protein): 
Click "SHOW" for view sequence
L (protein): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
P (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2020

text