General information
PDB ID 5M0R
Title CRYO-EM RECONSTRUCTION OF THE MAEDI-VISNA VIRUS (MVV) STRAND TRANSFER COMPLEX
PDB header HYDROLASE
Date 2016-10-05
Experimental method ELECTRON MICROSCOPY
Resolution (A) 8.2
Kind dna
Organism MAEDI VISNA VIRUS (STRAIN KV1772), VISNA LENTIVIRUS (STRAIN 1514), SYNTHETIC CONSTRUCT
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5m0r.pdb ABCDEFGHIJKLMNOP QRUSTV 0
Biounits:
5m0r.pdb1.pdb ABCDEFGHIJKLMNOP QRUSTV 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Integrase_Zn Domain P35956_1233-1270 2.1e-12 1 No_clan A 8 45   
rve Domain P35956_1285-1372 8.3e-12 1 CL0219 A 57 147 RTU  H-Mn S-Bb S-Mj L-Bb 
IN_DBD_C Domain P35956_1457-1500 0.00061 0 CL0010 A 230 273 Q  S-Bb 
Integrase_Zn Domain P35956_1233-1270 3.4e-12 1 No_clan B 8 60   
rve Domain P35956_1285-1372 5.3e-12 1 CL0219 B 41 147   
IN_DBD_C Domain P35956_1442-1475 0.00071 0 CL0010 B 230 264   
Integrase_Zn Domain P35956_1233-1270 1.9e-12 1 No_clan C 8 45   
rve Domain P35956_1285-1372 5.2e-12 1 CL0219 C 44 147   
IN_DBD_C Domain P35956_1446-1480 0.00073 0 CL0010 C 230 264   
rve Domain P35956_1285-1372 6.6e-12 1 CL0219 D 60 147   
IN_DBD_C Domain P35956_1399-1442 0.00043 0 CL0010 D 230 273   
Integrase_Zn Domain P35956_1233-1270 3.4e-12 1 No_clan E 8 60 R  H-Bb 
rve Domain P35956_1285-1372 5.4e-12 1 CL0219 E 41 147   
IN_DBD_C Domain P35956_1442-1475 0.00076 0 CL0010 E 230 263   
Integrase_Zn Domain P35956_1233-1270 2e-12 1 No_clan F 8 45   
rve Domain P35956_1285-1372 7.7e-12 1 CL0219 F 57 147   
IN_DBD_C Domain P35956_1446-1489 0.00058 0 CL0010 F 230 273 SU  L-Mj 
Integrase_Zn Domain P35956_1233-1270 1.3e-12 1 No_clan G 8 45   
rve Domain P35956_1285-1372 2.5e-12 1 CL0219 G 45 147   
rve Domain P35956_1285-1372 6.7e-12 1 CL0219 H 60 147   
IN_DBD_C Domain P35956_1399-1442 0.00043 0 CL0010 H 230 273   
Integrase_Zn Domain P35956_1233-1270 2.1e-12 1 No_clan I 8 45   
rve Domain P35956_1285-1372 8.3e-12 1 CL0219 I 57 147 RTV  H-Mj H-Mn S-Bb S-Mn 
IN_DBD_C Domain P35956_1457-1500 0.00061 0 CL0010 I 230 273   
Integrase_Zn Domain P35956_1233-1270 3.4e-12 1 No_clan J 8 60   
rve Domain P35956_1285-1372 5.3e-12 1 CL0219 J 41 147   
IN_DBD_C Domain P35956_1442-1475 0.00071 0 CL0010 J 230 264   
Integrase_Zn Domain P35956_1233-1270 1.9e-12 1 No_clan K 8 45   
rve Domain P35956_1285-1372 5.2e-12 1 CL0219 K 44 147   
IN_DBD_C Domain P35956_1446-1480 0.00073 0 CL0010 K 230 264   
rve Domain P35956_1285-1372 6.6e-12 1 CL0219 L 60 147   
IN_DBD_C Domain P35956_1399-1442 0.00043 0 CL0010 L 230 273 QT  L-Bb L-Mj 
Integrase_Zn Domain P35956_1233-1270 3.4e-12 1 No_clan M 8 60   
rve Domain P35956_1285-1372 5.4e-12 1 CL0219 M 41 147   
IN_DBD_C Domain P35956_1442-1475 0.00076 0 CL0010 M 230 263   
Integrase_Zn Domain P35956_1233-1270 2e-12 1 No_clan N 8 45   
rve Domain P35956_1285-1372 7.7e-12 1 CL0219 N 57 147   
IN_DBD_C Domain P35956_1446-1489 0.00058 0 CL0010 N 230 273 QV  L-Mj 
Integrase_Zn Domain P35956_1233-1270 1.3e-12 1 No_clan O 8 45   
rve Domain P35956_1285-1372 2.5e-12 1 CL0219 O 45 147   
rve Domain P35956_1285-1372 6.7e-12 1 CL0219 P 60 147   
IN_DBD_C Domain P35956_1399-1442 0.00043 0 CL0010 P 230 273   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 C viral capsid
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F aspartic-type endopeptidase activity
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F DNA binding
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F DNA-directed DNA polymerase activity
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F dUTP diphosphatase activity
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F exoribonuclease H activity
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F RNA-directed DNA polymerase activity
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F RNA-DNA hybrid ribonuclease activity
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 F zinc ion binding
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 P DNA integration
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 P DNA recombination
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 P establishment of integrated proviral latency
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 P nucleotide metabolic process
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 P viral entry into host cell
A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1228-1506 P viral genome integration into host DNA
Sequences
Download file with secondary structure created by Stride  
5m0r.pdb1.pdb:   [ download sequences in FASTA format ]
Q (dna): 
Click "SHOW" for view sequence
R (dna): 
Click "SHOW" for view sequence
S (dna): 
Click "SHOW" for view sequence
T (dna): 
Click "SHOW" for view sequence
U (dna): 
Click "SHOW" for view sequence
V (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
K (protein): 
Click "SHOW" for view sequence
L (protein): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
P (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text