General information
PDB ID 5M5Y
Title RNA POLYMERASE I ELONGATION COMPLEX 2
PDB header TRANSCRIPTION
Date 2016-10-23
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4
Kind hybrid
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5m5y.pdb ABCDEFGHIJKLMN ST R 0
Biounits:
5m5y.pdb1.pdb ABCDEFGHIJKLMN ST R 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_Rpb1_5 Domain P10964_989-1611 7.2e-90 1 No_clan A 989 1611 ST   
RNA_pol_Rpb1_2 Domain P10964_473-653 1.1e-70 1 No_clan A 473 653 RT   
RNA_pol_Rpb1_3 Domain P10964_656-833 2.1e-38 1 No_clan A 656 833   
RNA_pol_Rpb1_1 Domain P10964_8-471 3.2e-29 1 No_clan A 8 471 ST   
RNA_pol_Rpb1_4 Domain P10964_863-982 1.5e-23 1 No_clan A 863 982   
RNA_pol_Rpb2_6 Domain P22138_700-1065 2.8e-113 1 CL0410 B 700 1065 T   
RNA_pol_Rpb2_2 Domain P22138_210-403 4e-40 1 No_clan B 210 403 S   
RNA_pol_Rpb2_3 Domain P22138_486-551 1.6e-27 1 No_clan B 486 551 S   
RNA_pol_Rpa2_4 Domain P22138_593-651 5.6e-23 1 No_clan B 593 651   
RNA_pol_Rpb2_7 Domain P22138_1067-1201 0.0000000000000024 1 No_clan B 1067 1201   
RNA_pol_A_bac Domain P07703_83-220 4.1e-30 1 No_clan C 83 220   
RNA_pol_L Domain P07703_53-325 1.1e-20 1 CL0509 C 53 325   
RNA_pol_Rpb5_C Domain P20434_142-214 1.6e-31 1 No_clan E 142 214   
RNA_pol_Rpb5_N Domain P20434_6-100 1.1e-29 1 CL0236 E 6 100   
SHS2_Rpb7-N Domain P46669_44-125 0.00000000000013 1 CL0319 G 44 125   
RNA_POL_M_15KD Domain P32529_7-42 0.000000000000004 1 CL0167 I 7 42   
RNA_pol_N Domain P22139_1-60 6.8e-30 1 No_clan J 1 60   
RNA_pol_L_2 Domain P28000_60-134 3.6e-33 1 CL0509 K 60 134   
DNA_RNApol_7kD Domain P40422_29-60 1.6e-16 1 CL0167 L 29 60   
RNA_pol_Rpb2_1 Family P22138_40-459 7.5e-50 1 No_clan B 40 459 RS   
RNA_polI_A14 Family P50106_18-96 0.00000000063 1 No_clan D 47 100   
RNA_polI_A14 Family P50106_18-96 0.00000000073 1 No_clan D 18 81   
RNA_pol_Rpb6 Family P20435_79-132 1.2e-17 1 No_clan F 79 132   
RNA_pol_Rpb8 Family P20436_7-146 3.4e-43 1 CL0021 H 7 146   
RNA_pol_I_A49 Family Q01080_33-110 2.7e-18 1 No_clan M 33 110   
RNA_polI_A34 Family P47006_49-180 1.7e-21 1 No_clan N 44 177   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5m5y.pdb1.pdb:   [ download sequences in FASTA format ]
S (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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R (rna): 
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