General information
PDB ID 5MHJ
Title ICP4 DNA-BINDING DOMAIN, LACKING INTRINSICALLY DISORDERED REGION, IN COMPLEX WITH 12MER DNA DUPLEX FROM ITS OWN PROMOTER
PDB header TRANSCRIPTION
Date 2016-11-24
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.12
Kind dna
Organism HUMAN HERPESVIRUS 1 (STRAIN 17)
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5mhj.pdb AB EF 0
Biounits:
5mhj.pdb1.pdb AB EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Herpes_ICP4_N Family P08392_311-483 4.6e-80 1 No_clan A 311 483 EF  H-Bb L-Bb L-Mj L-Mn 
Herpes_ICP4_N Family P08392_311-483 9.2e-74 1 No_clan B 311 483 EF  H-Bb L-Bb L-Mj L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=288-487 C host cell cytoplasm
A/B=288-487 C host cell nucleus
A/B=288-487 C viral tegument
A/B=288-487 F DNA binding
A/B=288-487 P DNA-templated viral transcription
A/B=288-487 P positive regulation of transcription, DNA-templated
A/B=288-487 P response to type I interferon
Sequences
Download file with secondary structure created by Stride  
5mhj.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
F (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text