General information
PDB ID 5MPS
Title STRUCTURE OF A SPLICEOSOME REMODELED FOR EXON LIGATION
PDB header SPLICING
Date 2016-12-18
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.85
Kind rna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5mps.pdb ACHJKLMNOPRSTacoXybdefghj IE265 0
Biounits:
5mps.pdb1.pdb ACHJKLMNOPRSTacoXybdefghj IE265 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PROCN Domain P33334_470-874 1.7e-218 1 No_clan A 470 874 256   
PRP8_domainIV Domain P33334_1832-2061 1.3e-121 1 No_clan A 1832 2061 2I   
PRO8NT Domain P33334_131-282 2.3e-79 1 No_clan A 131 282 5   
U5_2-snRNA_bdg Domain P33334_1282-1415 3.2e-69 1 No_clan A 1282 1415 5   
RRM_4 Domain P33334_1059-1150 2.5e-47 1 No_clan A 1059 1150 2   
U6-snRNA_bdg Domain P33334_1514-1672 1.3e-40 1 CL0363 A 1600 1672   
LSM Domain P40018_10-97 2.1e-22 1 CL0527 b 10 97 5   
GTP_EFTU Domain 2.9e-36 1 CL0023 C 131 443 5
GTP_EFTU_D2 Domain P36048_481-578 1.5e-16 1 CL0575 C 481 578   
EFG_C Domain P36048_856-948 1.2e-14 1 CL0437 C 856 948   
EFG_IV Domain P36048_744-854 2.2e-10 1 CL0329 C 720 854   
Slu7 Domain Q02775_166-348 0.00013 0 No_clan c 166 226 5   
LSM Domain P43321_9-74 2.1e-16 1 CL0527 d 9 74 5   
LSM Domain Q12330_19-92 2e-16 1 CL0527 e 19 92 5   
LSM Domain P54999_17-83 1.8e-19 1 CL0527 f 17 83 5   
LSM Domain P40204_5-73 3.6e-16 1 CL0527 g 5 73 5   
LSM Domain Q02260_5-97 6.1e-27 1 CL0527 h 5 97 5   
LSM Domain Q06217_37-106 1e-17 1 CL0527 j 37 106 5   
G10 Domain P25337_1-155 3.9e-63 1 No_clan L 2 155 6   
Torus Domain Q12046_4-114 4.6e-33 1 CL0537 M 4 114 6   
RRM_1 Domain Q12046_149-206 3.5e-06 1 CL0221 M 149 206 6I   
Myb_DNA-binding Domain Q03654_10-56 1.1e-12 1 CL0123 O 10 56 26   
Myb_DNA-binding Domain Q03654_63-106 1.3e-07 1 CL0123 O 63 106   
cwf21 Domain Q03375_66-109 2.6e-15 1 No_clan R 66 109   
SYF2 Domain P53277_92-211 2.7e-06 1 No_clan y 96 210 26   
Prp18 Family P33411_114-246 1.1e-06 0 No_clan a 114 223 5   
MA3 Family P53333_291-398 4.8e-26 1 CL0020 H 291 398   
SKIP_SNW Family P28004_90-225 1.2e-36 1 No_clan K 79 225 26   
Cwf_Cwc_15 Family 4.4e-05 0 No_clan P 4 132 26
Cwf_Cwc_15 Family 6.2e-05 0 No_clan P 126 175
HAT Family Q12309_180-211 9.5e-07 1 CL0020 S 180 211   
WD40 Repeat Q12417_172-210 1.5e-05 1 CL0186 J 214 252 6   
WD40 Repeat Q12417_172-210 3.2e-05 1 CL0186 J 129 168   
WD40 Repeat Q12417_172-210 0.00027 1 CL0186 J 172 210   
WD40 Repeat Q12417_172-210 0.0006 1 CL0186 J 256 294   
WD40 Repeat P40968_155-191 8.5e-07 1 CL0186 o 283 321   
WD40 Repeat P40968_155-191 2.4e-06 1 CL0186 o 196 234 6   
WD40 Repeat P40968_155-191 0.00011 1 CL0186 o 71 191 6   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5mps.pdb1.pdb:   [ download sequences in FASTA format ]
a (protein): 
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b (protein): 
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c (protein): 
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d (protein): 
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f (protein): 
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g (protein): 
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h (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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X (protein): 
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y (protein): 
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2 (rna): 
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5 (rna): 
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6 (rna): 
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E (rna): 
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I (rna): 
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