General information
PDB ID 5MS0
Title PSEUDO-ATOMIC MODEL OF THE RNA POLYMERASE LAMBDA-BASED ANTITERMINATION COMPLEX SOLVED BY CRYO-EM
PDB header TRANSCRIPTION/DNA/RNA
Date 2016-12-29
Experimental method ELECTRON MICROSCOPY
Resolution (A) 9.8
Kind hybrid
Organism ESCHERICHIA PHAGE LAMBDA, ESCHERICHIA COLI, ESCHERICHIA COLI K-12
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5ms0.pdb NABCDEFLMO IJ RH 0
Biounits:
5ms0.pdb1.pdb NABCDEFLMO IJ RH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_L Domain P0A7Z4_29-228 1.3e-24 1 CL0509 A 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 8.1e-24 1 No_clan A 58 185   
RNA_pol_L Domain P0A7Z4_29-228 1.3e-24 1 CL0509 B 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 8.1e-24 1 No_clan B 58 185   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 1.6e-77 1 CL0410 C 717 1101   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 2.4e-29 1 No_clan C 513 581 J   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 5.7e-28 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 1.8e-27 1 No_clan C 1266 1342   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 0.0000000000000052 1 No_clan C 330 454   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 0.00000015 1 No_clan C 151 283   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 6.9e-90 1 No_clan D 14 342 J   
RNA_pol_Rpb1_5 Domain P0A8T7_766-1317 5.3e-78 1 No_clan D 766 1317 HJ   
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 3.7e-27 1 No_clan D 386 486 J   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 4.1e-27 1 No_clan D 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.4e-16 1 No_clan D 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 0.00000012 1 No_clan D 344 401   
NusG Domain P0AFG0_7-112 1.9e-27 1 CL0439 F 7 112 I   
NusB Domain P0A780_7-132 5.1e-35 1 CL0633 L 7 132 R   
NusA_N Domain P0AFF6_4-124 1.2e-37 1 No_clan M 4 124   
KH_5 Domain P0AFF6_230-298 1.3e-27 1 CL0007 M 230 298 R   
S1 Domain P0AFF6_131-197 0.00013 1 CL0021 M 131 197   
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.1e-58 1 No_clan C 26 500   
Ribosomal_S10 Family P0A7R5_7-101 3.7e-34 1 No_clan E 7 101   
KOW Family P0AFG0_130-165 0.000000055 1 CL0107 F 130 165   
N36 Family P03045_2-36 3.2e-25 1 No_clan N 2 36 R   
RNA_pol_Rpb6 Family P0A800_8-60 0.0000000000000018 1 No_clan O 8 60   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5ms0.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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H (rna): 
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R (rna): 
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