General information
PDB ID 5MY1
Title E. COLI EXPRESSOME
PDB header RIBOSOME
Date 2017-01-25
Experimental method ELECTRON MICROSCOPY
Resolution (A) 7.6
Kind rna
Organism ESCHERICHIA COLI K-12
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5my1.pdb CDEFGHIJKLMNOPQRSTBUVWXYZ A 0
Biounits:
5my1.pdb1.pdb CDEFGHIJKLMNOPQRSTBUVWXYZ A 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S3_C Domain P0A7V3_120-202 1.6e-41 1 No_clan C 119 201 A   
KH_2 Domain P0A7V3_38-111 8.3e-19 1 CL0007 C 37 110   
S4 Domain P0A7V8_96-143 7.2e-19 1 CL0492 D 95 142 A   
Ribosomal_S5_C Domain P0A7W1_86-157 1.4e-30 1 CL0329 E 85 156 A   
Ribosomal_S5 Domain P0A7W1_11-75 1.3e-29 1 CL0196 E 10 74 A   
Ribosomal_S6 Domain P02358_3-91 1.5e-28 1 No_clan F 3 91 A   
Ribosomal_S7 Domain P02359_2-149 1.2e-63 1 No_clan G 2 148 A   
Ribosomal_S8 Domain P0A7W7_5-130 4.8e-49 1 No_clan H 4 129 A   
Ribosomal_S15 Domain P0ADZ4_8-87 3.8e-38 1 CL0600 O 7 87 A   
Ribosomal_S17 Domain P0AG63_10-77 1.3e-34 1 CL0021 Q 9 76 A   
Ribosomal_S19 Domain P0A7U3_3-81 5.7e-35 1 No_clan S 2 80 A   
RNA_pol_L Domain P0A7Z4_29-228 1.1e-24 1 CL0509 V 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 7.6e-24 1 No_clan V 58 178   
RNA_pol_L Domain P0A7Z4_29-228 1e-24 1 CL0509 W 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 6.2e-24 1 No_clan W 58 186   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 1.3e-160 1 CL0410 X 717 1264 A   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.5e-30 1 No_clan X 513 581   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 5.9e-28 1 No_clan X 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 2.7e-27 1 No_clan X 1266 1341   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 0.0000000000000052 1 No_clan X 329 454   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 0.00000023 1 No_clan X 151 276   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 6.9e-90 1 No_clan Y 14 342   
RNA_pol_Rpb1_5 Domain P0A8T7_766-1317 1.1e-75 1 No_clan Y 766 1317   
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 3.7e-27 1 No_clan Y 386 486   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 4.1e-27 1 No_clan Y 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.8e-18 1 No_clan Y 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 0.00000012 1 No_clan Y 344 401   
Ribosomal_S2 Family P0A7V0_9-224 3.3e-94 1 CL0067 B 8 223 A   
Ribosomal_S4 Family P0A7V8_3-95 1.7e-32 1 CL0492 D 2 94 A   
Ribosomal_S9 Family P0A7X3_10-130 1.2e-46 1 CL0329 I 9 129 A   
Ribosomal_S10 Family P0A7R5_7-101 1.2e-34 1 No_clan J 7 101 A   
Ribosomal_S11 Family P0A7R9_19-128 1.3e-54 1 CL0267 K 18 127 A   
Ribosom_S12_S23 Family P0A7S3_12-123 4.9e-43 1 CL0021 L 11 122 A   
Ribosomal_S13 Family P0A7S9_3-108 6.5e-34 1 CL0303 M 2 107 A   
Ribosomal_S14 Family P0AG59_47-100 8.9e-27 1 No_clan N 46 99 A   
Ribosomal_S16 Family P0A7T3_8-68 2.5e-24 1 No_clan P 8 68 A   
Ribosomal_S18 Family P0A7T7_20-68 1.1e-24 1 No_clan R 19 67 A   
Ribosomal_S20p Family P0A7U7_3-84 6e-27 1 No_clan T 2 83 A   
Ribosomal_S21 Family P68679_4-54 1.1e-21 1 No_clan U 3 53 A   
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.2e-58 1 No_clan X 26 500   
RNA_pol_Rpb6 Family P0A800_8-60 0.0000000000000013 1 No_clan Z 8 60   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5my1.pdb1.pdb:   [ download sequences in FASTA format ]
B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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A (rna): 
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