General information
PDB ID 5N9G
Title TFIIIB -TBP/BRF2/DNA AND SANT DOMAIN OF BDP1-
PDB header TRANSCRIPTION
Date 2017-02-24
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.7
Kind hybrid
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5n9g.pdb ABCFGH DEIJ DEIJ 0
Biounits:
5n9g.pdb1.pdb ABC DE DE 1
5n9g.pdb2.pdb FGH IJ IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TFIIB Domain Q9HAW0_63-157 2.9e-05 1 CL0065 A 65 159 DE  H-Bb H-Mj L-Bb L-Mn 
TBP Domain P20226_162-244 6.1e-33 1 CL0407 B 162 244 DE   
TBP Domain P20226_252-335 1.5e-31 1 CL0407 B 252 334 DE   
Myb_DNA-bind_7 Domain A6H8Y1_293-384 3.9e-30 1 CL0123 C 293 380 DE   
TFIIB Domain Q9HAW0_63-157 2.6e-05 1 CL0065 F 65 159 IJ  H-Bb L-Mn 
TBP Domain P20226_162-244 6.1e-33 1 CL0407 G 162 244 IJ   
TBP Domain P20226_252-335 1.5e-31 1 CL0407 G 252 334 IJ   
Myb_DNA-bind_7 Domain A6H8Y1_293-384 4.7e-30 1 CL0123 H 293 381 IJ   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/F=62-419 C nucleoplasm
A/F=62-419 C nucleus
A/F=62-419 C transcription factor TFIIIB complex
A/F=62-419 C transcription preinitiation complex
A/F=62-419 F metal ion binding
A/F=62-419 F RNA polymerase II complex recruiting activity
A/F=62-419 F RNA polymerase II core promoter sequence-specific DNA binding
A/F=62-419 F RNA polymerase III type 3 promoter sequence-specific DNA binding
A/F=62-419 F TBP-class protein binding
A/F=62-419 F transcription factor binding
A/F=62-419 P cellular response to oxidative stress
A/F=62-419 P DNA-templated transcription, initiation
A/F=62-419 P regulation of transcription by RNA polymerase III
A/F=62-419 P RNA polymerase II preinitiation complex assembly
A/F=62-419 P transcriptional start site selection at RNA polymerase II promoter
B/G=159-339 C cytoplasm
B/G=159-339 C female pronucleus
B/G=159-339 C male pronucleus
B/G=159-339 C nuclear chromatin
B/G=159-339 C nuclear euchromatin
B/G=159-339 C nucleoplasm
B/G=159-339 C nucleus
B/G=159-339 C protein-containing complex
B/G=159-339 C transcription factor TFIIA complex
B/G=159-339 C transcription factor TFIID complex
B/G=159-339 C transcription factor TFIIIB complex
B/G=159-339 C transcription preinitiation complex
B/G=159-339 C transcription regulator complex
B/G=159-339 F aryl hydrocarbon receptor binding
B/G=159-339 F core promoter sequence-specific DNA binding
B/G=159-339 F DNA-binding transcription factor activity
B/G=159-339 F enzyme binding
B/G=159-339 F repressing transcription factor binding
B/G=159-339 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
B/G=159-339 F RNA polymerase II core promoter sequence-specific DNA binding
B/G=159-339 F RNA polymerase II general transcription initiation factor activity
B/G=159-339 F RNA polymerase II general transcription initiation factor binding
B/G=159-339 F RNA polymerase II repressing transcription factor binding
B/G=159-339 F RNA polymerase III general transcription initiation factor activity
B/G=159-339 F RNA polymerase III transcription regulatory region sequence-specific DNA binding
B/G=159-339 F TFIIB-class transcription factor binding
B/G=159-339 F transcription factor binding
B/G=159-339 F transcription regulatory region sequence-specific DNA binding
B/G=159-339 P positive regulation of gene expression, epigenetic
B/G=159-339 P positive regulation of transcription, DNA-templated
B/G=159-339 P regulation of signal transduction by p53 class mediator
B/G=159-339 P RNA polymerase II preinitiation complex assembly
B/G=159-339 P RNA polymerase III preinitiation complex assembly
B/G=159-339 P snRNA transcription by RNA polymerase II
B/G=159-339 P spermatogenesis
B/G=159-339 P termination of RNA polymerase I transcription
B/G=159-339 P transcription by RNA polymerase II
B/G=159-339 P transcription by RNA polymerase III
B/G=159-339 P transcription elongation from RNA polymerase I promoter
B/G=159-339 P transcription initiation from RNA polymerase I promoter
B/G=159-339 P transcription initiation from RNA polymerase II promoter
B/G=159-339 P viral process
C/H=241-396 C nucleoplasm
C/H=241-396 C transcription factor TFIIIB complex
C/H=241-396 F TFIIIC-class transcription factor complex binding
C/H=241-396 P RNA polymerase III preinitiation complex assembly
Sequences
Download file with secondary structure created by Stride  
5n9g.pdb1.pdb:   [ download sequences in FASTA format ]
D (hybrid): 
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E (hybrid): 
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A (protein): 
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B (protein): 
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C (protein): 
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5n9g.pdb2.pdb:   [ download sequences in FASTA format ]
I (hybrid): 
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J (hybrid): 
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F (protein): 
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G (protein): 
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H (protein): 
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