General information
PDB ID 5NO3
Title RSGA-GDPNP BOUND TO THE 30S RIBOSOMAL SUBUNIT (RSGA ASSEMBLY INTERMEDIATE WITHOUT US3)
PDB header RIBOSOME
Date 2017-04-10
Experimental method ELECTRON MICROSCOPY
Resolution (A) 5.16
Kind rna
Organism ESCHERICHIA COLI (STRAIN K12)
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5no3.pdb BDEFGHIJKLMNOPQRSTZ A 0
Biounits:
5no3.pdb1.pdb BDEFGHIJKLMNOPQRSTZ A 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
S4 Domain P0A7V8_96-143 7.2e-19 1 CL0492 D 96 143 A   
Ribosomal_S5_C Domain P0A7W1_86-157 1.5e-30 1 CL0329 E 86 157 A   
Ribosomal_S5 Domain P0A7W1_11-75 1.4e-29 1 CL0196 E 11 75 A   
Ribosomal_S6 Domain P02358_3-91 1.8e-28 1 No_clan F 3 91 A   
Ribosomal_S7 Domain 1.4e-19 1 No_clan G 2 95 A
Ribosomal_S7 Domain 0.000000000088 1 No_clan G 70 131 A
Ribosomal_S8 Domain P0A7W7_5-130 4.8e-49 1 No_clan H 5 130 A   
Ribosomal_S15 Domain P0ADZ4_8-87 2.2e-38 1 CL0600 O 8 88 A   
Ribosomal_S17 Domain P0AG63_10-77 1.3e-34 1 CL0021 Q 10 77 A   
Ribosomal_S19 Domain P0A7U3_3-81 5.7e-35 1 No_clan S 3 81 A   
RsgA_GTPase Domain P39286_100-276 3.7e-57 1 CL0023 Z 100 276 A   
Ribosomal_S2 Family P0A7V0_9-224 3.7e-94 1 CL0067 B 9 224 A   
Ribosomal_S4 Family P0A7V8_3-95 1.7e-32 1 CL0492 D 3 95 A   
Ribosomal_S9 Family P0A7X3_10-130 1.2e-46 1 CL0329 I 10 130 A   
Ribosomal_S10 Family P0A7R5_7-101 1.3e-34 1 No_clan J 7 101 A   
Ribosomal_S11 Family P0A7R9_19-128 1.3e-54 1 CL0267 K 19 128 A   
Ribosomal_S13 Family P0A7S9_3-108 6.5e-34 1 CL0303 M 3 108 A   
Ribosomal_S14 Family P0AG59_47-100 9.9e-27 1 No_clan N 47 100 A   
Ribosomal_S16 Family P0A7T3_8-68 2.5e-24 1 No_clan P 8 68 A   
Ribosomal_S18 Family P0A7T7_20-68 1.1e-24 1 No_clan R 20 68 A   
Ribosomal_S20p Family P0A7U7_3-84 1.8e-27 1 No_clan T 2 84 A   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5no3.pdb1.pdb:   [ download sequences in FASTA format ]
B (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
K (protein): 
Click "SHOW" for view sequence
L (protein): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
P (protein): 
Click "SHOW" for view sequence
Q (protein): 
Click "SHOW" for view sequence
R (protein): 
Click "SHOW" for view sequence
S (protein): 
Click "SHOW" for view sequence
T (protein): 
Click "SHOW" for view sequence
Z (protein): 
Click "SHOW" for view sequence
A (rna): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text