General information
PDB ID 5NSS
Title CRYO-EM STRUCTURE OF RNA POLYMERASE-SIGMA54 HOLOENZYME WITH PROMOTER DNA AND TRANSCRIPTION ACTIVATOR PSPF INTERMEDATE COMPLEX
PDB header TRANSCRIPTION
Date 2017-04-26
Experimental method ELECTRON MICROSCOPY
Resolution (A) 5.8
Kind dna
Organism ESCHERICHIA COLI K-12, KLEBSIELLA PNEUMONIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5nss.pdb ABCDEFGJKLNM HI 0
Biounits:
5nss.pdb1.pdb ABCDEFGJKLNM HI 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_L Domain P0A7Z4_29-228 1.4e-24 1 CL0509 A 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 8.3e-24 1 No_clan A 58 185   
RNA_pol_L Domain P0A7Z4_29-228 1.3e-24 1 CL0509 B 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 8.1e-24 1 No_clan B 58 185   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 1.4e-160 1 CL0410 C 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.5e-30 1 No_clan C 513 581   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 6e-28 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 3.9e-27 1 No_clan C 1266 1340   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 0.0000000000000054 1 No_clan C 329 454   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 0.00000023 1 No_clan C 151 276   
RNA_pol_Rpb1_5 Domain P0A8T7_766-1317 5e-78 1 No_clan D 766 1317   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 1.2e-74 1 No_clan D 15 342   
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 3.7e-27 1 No_clan D 386 486   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 4e-27 1 No_clan D 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.8e-18 1 No_clan D 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 0.00000011 1 No_clan D 344 401   
Sigma54_activat Domain P37344_8-175 1.1e-62 1 CL0023 F 8 175   
Sigma54_activat Domain P37344_8-175 1.1e-62 1 CL0023 G 8 175   
Sigma54_activat Domain P37344_8-175 1.1e-62 1 CL0023 J 8 175   
Sigma54_activat Domain P37344_8-175 1.1e-62 1 CL0023 K 8 175   
Sigma54_activat Domain P37344_8-175 1.1e-62 1 CL0023 L 8 175   
Sigma54_DBD Domain P06223_316-473 1.4e-57 1 CL0123 M 308 475 H   
Sigma54_CBD Domain P06223_118-257 8.1e-40 1 CL0123 M 42 264   
Sigma54_activat Domain P37344_8-175 1.1e-62 1 CL0023 N 8 175   
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.3e-58 1 No_clan C 26 500   
RNA_pol_Rpb6 Family P0A800_8-60 0.000000000000001 1 No_clan E 8 60   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5nss.pdb1.pdb:   [ download sequences in FASTA format ]
H (dna): 
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I (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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