General information
PDB ID 5O60
Title STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM MYCOBACTERIUM SMEGMATIS
PDB header RIBOSOME
Date 2017-06-02
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.2
Kind rna
Organism MYCOBACTERIUM SMEGMATIS STR. MC2 155
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5o60.pdb 3CDEFGHIJKLMNOPQRSTUVWXYZabcdefg AB2 0
Biounits:
5o60.pdb1.pdb 3CDEFGHIJKLMNOPQRSTUVWXYZabcdefg AB2 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L30 Domain A0QSG7_4-54 1.4e-18 1 No_clan a 4 54 AB   
Ribosomal_L2_C Domain A0QSD4_126-251 5e-55 1 CL0107 C 126 251 A   
Ribosomal_L2 Domain A0QSD4_42-119 7.3e-34 1 CL0021 C 42 119 A   
Ribosomal_L5_C Domain A0QSG1_91-184 9.7e-39 1 No_clan F 91 184 AB   
Ribosomal_L5 Domain A0QSG1_31-87 1e-25 1 CL0652 F 31 87 AB   
Ribosomal_L36 Domain A0QSL4_1-37 2e-18 1 No_clan f 1 37 AB   
Ribosomal_L6 Domain A0QSG4_91-166 8.8e-21 1 No_clan G 91 166 A   
Ribosomal_L6 Domain A0QSG4_11-83 3.3e-18 1 No_clan G 11 83 A   
Ribosomal_L9_C Domain A0R7F6_63-150 3.8e-26 1 No_clan H 63 150 A   
Ribosomal_L9_N Domain A0R7F6_1-47 2.6e-19 1 No_clan H 1 47 A   
Ribosomal_L11_N Domain A0QS45_10-68 3.1e-29 1 No_clan J 11 68 A   
Ribosomal_L11 Domain A0QS45_73-141 5.8e-27 1 No_clan J 73 141 A   
Ribosomal_L14 Domain A0QSF9_1-122 3.2e-55 1 No_clan L 1 122 A   
Ribosomal_L22 Domain A0QSD6_12-115 9.1e-37 1 No_clan T 12 115 A   
Ribosomal_L25p Domain A0R3D2_11-97 2.6e-24 1 No_clan W 11 97 B   
Ribosomal_TL5_C Domain A0R3D2_105-185 2e-17 1 No_clan W 105 185 A   
Ribosomal_L32p Family A0R3I9_2-50 0.00000000000003 1 CL0167 b 2 50 A   
Ribosomal_L33 Family A0QS39_9-54 4.5e-22 1 CL0167 c 9 54 A   
Ribosomal_L34 Family A0R7K0_4-47 6e-19 1 No_clan d 4 47 A   
Ribosomal_L3 Family A0QSD1_80-191 2.1e-18 1 CL0575 D 79 191 A   
Ribosomal_L4 Family A0QSD2_18-206 1.3e-65 1 No_clan E 18 206 A   
Ribosomal_L35p Family A0QYU7_2-62 1.1e-24 1 No_clan e 2 62 A   
Ribosomal_L31 Family A0R215_1-48 4.7e-21 1 No_clan g 1 48 AB   
Ribosomal_L10 Family A0QS62_1-98 5.1e-27 1 No_clan I 1 98 A   
DUF3182 Family 0.00018 0 No_clan I 3 120 A
Ribosomal_L13 Family A0QSP8_14-138 1.9e-54 1 No_clan K 14 138 A   
Ribosomal_L27A Family A0QSG8_29-146 8.9e-32 1 CL0588 M 29 146 A   
Ribosomal_L16 Family A0QSD8_4-132 2.8e-47 1 No_clan N 4 132 AB   
Ribosomal_L17 Family A0QSL9_20-116 5.6e-38 1 No_clan O 20 116 A   
Ribosomal_L18p Family A0QSG5_12-127 5.8e-45 1 CL0267 P 12 127 AB   
Ribosomal_L19 Family A0QV42_2-112 8.7e-51 1 CL0107 Q 2 112 A   
Ribosomal_L20 Family A0QYU6_3-109 1.3e-41 1 No_clan R 3 109 A   
Ribosomal_L21p Family A0R151_3-102 7.5e-34 1 No_clan S 3 102 A   
Ribosomal_L23 Family A0QSD3_9-95 1e-31 1 No_clan U 9 95 A   
ribosomal_L24 Family A0QSG0_38-105 1.1e-22 1 No_clan V 38 105 A   
KOW Family A0QSG0_5-36 0.000000024 1 CL0107 V 5 36 A   
Ribosomal_L27 Family A0R150_8-80 3.4e-33 1 No_clan X 8 80 AB   
Ribosomal_L28 Family A0QV03_3-61 1.7e-22 1 No_clan Y 3 61 A   
Ribosomal_L29 Family A0QSD9_8-64 3.3e-25 1 CL0346 Z 8 64 A   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5o60.pdb1.pdb:   [ download sequences in FASTA format ]
3 (protein): 
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C (protein): 
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D (protein): 
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e (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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2 (rna): 
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A (rna): 
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B (rna): 
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