General information
PDB ID 5OA3
Title HUMAN 40S-EIF2D-RE-INITIATION COMPLEX
PDB header TRANSLATION
Date 2017-06-20
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.3
Kind rna
Organism HOMO SAPIENS, SACCHAROMYCES CEREVISIAE, HEPATITIS C VIRUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5oa3.pdb 0ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefgh 123 0
Biounits:
5oa3.pdb1.pdb 0ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefgh 123 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SUI1 Domain P41214_487-567 1.2e-18 1 No_clan 0 487 567 123   
Ribosomal_S5 Domain P15880_102-166 1.1e-32 1 CL0196 C 102 166 2   
Ribosomal_S5_C Domain P15880_185-256 2e-28 1 CL0329 C 185 256 2   
Ribosomal_S3_C Domain P23396_105-188 6.4e-23 1 No_clan D 105 188 2   
KH_2 Domain P23396_20-96 0.000000000021 1 CL0007 D 20 96 2   
RS4NT Domain P62701_3-39 7.3e-22 1 No_clan E 3 39 2   
S4 Domain P62701_42-90 0.0000082 1 CL0492 E 42 90 2   
Ribosomal_S7 Domain P46782_51-204 2.8e-37 1 No_clan F 51 204 2   
Ribosomal_S27 Domain Q5RKT7_102-147 1.1e-28 1 CL0167 f 102 147 2   
S4 Domain P46781_108-154 0.000000000038 1 CL0492 J 108 154 2   
S10_plectin Domain P46783_3-97 7.8e-51 1 No_clan K 3 97 2   
Ribosomal_S17 Domain P62280_75-144 1.6e-29 1 CL0021 L 75 144 2   
Ribosomal_L7Ae Domain P25398_16-111 2.3e-30 1 CL0101 M 16 111 2   
Ribosomal_S13_N Domain P62277_2-60 2.2e-31 1 No_clan N 2 60 2   
Ribosomal_S15 Domain P62277_70-148 9e-16 1 CL0600 N 70 149 2   
Ribosomal_S19 Domain P62841_43-128 8.9e-41 1 No_clan P 43 128 2   
Ribosomal_S8 Domain P62244_5-130 2.1e-22 1 No_clan W 5 130 2   
Ribosomal_S26e Family P62854_2-102 5.4e-53 1 No_clan a 2 102 23   
Ribosomal_S2 Family P08865_111-184 0.0000000000007 1 CL0067 A 111 184 2   
Ribosomal_S2 Family P08865_18-118 0.000000000036 1 CL0067 A 18 118 23   
40S_SA_C Family P08865_202-217 0.00016 0 No_clan A 202 217   
Ribosomal_S3Ae Family P61247_21-221 1.7e-106 1 No_clan B 21 221 23   
Ribosomal_S27e Family P42677_28-82 1.3e-30 1 CL0167 b 28 82 23   
Ribosomal_S28e Family P62857_8-68 4.1e-35 1 CL0021 c 8 68 23   
Ribosomal_S14 Family P62273_6-55 0.0000000000000025 1 No_clan d 6 55 2   
Ribosomal_S4e Family P62701_95-169 7.1e-40 1 No_clan E 95 169 2   
40S_S4_C Family P62701_212-259 1.7e-30 1 No_clan E 212 259 2   
Ribosomal_S30 Family P62861_4-58 3.5e-29 1 No_clan e 4 58 2   
KOW Family P62701_177-211 0.000021 1 CL0107 E 177 211 2   
Ribosomal_S6e Family P62753_1-126 7.4e-70 1 No_clan G 1 126 2   
Ribosomal_S7e Family P62081_8-191 1.4e-93 1 CL0652 H 8 191 2   
Ribosomal_L41 Family P62945_2-25 0.000000000038 1 CL0652 h 2 25 2   
Ribosomal_S8e Family P62241_2-190 3e-62 1 No_clan I 2 190 2   
Ribosomal_S4 Family P46781_9-140 0.0000095 1 CL0492 J 9 107 2   
Ribosomal_S17_N Family P62280_5-73 3.5e-37 1 No_clan L 5 73 2   
Ribosomal_S11 Family P62263_29-147 2.5e-47 1 CL0267 O 29 147 2   
Ribosomal_S9 Family P62249_14-146 4.2e-34 1 CL0329 Q 14 146 12   
Ribosomal_S17e Family P08708_2-122 2.9e-69 1 No_clan R 2 119 2   
Ribosomal_S13 Family P62269_14-142 2.7e-56 1 CL0303 S 14 142 2   
Ribosomal_S19e Family P39019_5-141 1.4e-58 1 CL0123 T 5 141 2   
Ribosomal_S10 Family P60866_21-115 3e-31 1 No_clan U 21 115 2   
Ribosomal_S21e Family P63220_1-80 2.9e-43 1 No_clan V 1 80   
Ribosom_S12_S23 Family P62266_29-140 1.3e-52 1 CL0021 X 29 142 2   
Ribosomal_S24e Family P62847_24-102 5.2e-46 1 No_clan Y 24 102 2   
Ribosomal_S25 Family P62851_42-112 1.7e-37 1 CL0123 Z 42 112 2   
WD40 Repeat P63244_224-260 0.0000000068 1 CL0186 g 95 133 2   
WD40 Repeat P63244_224-260 0.0000000091 1 CL0186 g 53 91 2   
WD40 Repeat P63244_224-260 0.000036 1 CL0186 g 136 178 2   
WD40 Repeat P63244_224-260 0.000047 1 CL0186 g 182 220 2   
WD40 Repeat P63244_224-260 0.00011 1 CL0186 g 224 260   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5oa3.pdb1.pdb:   [ download sequences in FASTA format ]
0 (protein): 
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a (protein): 
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b (protein): 
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C (protein): 
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D (protein): 
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e (protein): 
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f (protein): 
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g (protein): 
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h (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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1 (rna): 
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2 (rna): 
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3 (rna): 
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