General information
PDB ID 5OOM
Title STRUCTURE OF A NATIVE ASSEMBLY INTERMEDIATE OF THE HUMAN MITOCHONDRIAL RIBOSOME WITH UNFOLDED INTERFACIAL RRNA
PDB header RIBOSOME
Date 2017-08-08
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.03
Kind rna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5oom.pdb DEFHIJKLMNOPQRSTUVWXYZ012356789abcdefghijklmopqrstuvw AB 0
Biounits:
5oom.pdb1.pdb DEFHIJKLMNOPQRSTUVWXYZ012356789abcdefghijklmopqrstuvw AB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PBP Domain Q96DV4_184-312 0.0000000033 1 No_clan 6 175 316   
L51_S25_CI-B8 Domain Q8N983_43-95 0.00000000003 1 CL0172 b 43 95 A   
Ribosomal_L2 Domain Q5T653_84-165 3.5e-29 1 CL0021 D 84 165 A   
Ribosomal_L2_C Domain Q5T653_177-295 8.2e-29 1 CL0107 D 177 290 A   
Tim44 Domain Q9BRJ2_118-266 1.6e-24 1 CL0051 d 118 266 A   
Img2 Domain Q13405_82-166 1.6e-28 1 No_clan g 82 166 A   
Ribosomal_L9_N Domain Q9BYD2_94-140 3.4e-17 1 No_clan H 94 140 A   
Ribosomal_L50 Domain Q8N5N7_60-155 0.0000000000073 1 CL0314 h 60 155 A   
Ribosomal_L11_N Domain Q9Y3B7_18-78 4.4e-23 1 No_clan J 20 78 A   
Ribosomal_L11 Domain Q9Y3B7_83-155 1.6e-22 1 No_clan J 84 155 A   
Ribosomal_L14 Domain Q6P1L8_31-145 1.1e-17 1 No_clan L 31 145 A   
Ribosomal_L22 Domain Q9NWU5_69-173 1.3e-18 1 No_clan T 75 178 A   
PP-binding Domain O14561_81-148 0.0000000000013 1 CL0314 w 80 148 A   
Ribosomal_L30 Domain Q8TCC3_67-117 0.000000000001 1 No_clan Z 67 117 A   
Ribosomal_L32p Family Q9BYC8_79-136 0.0000000059 1 CL0167 0 79 136 A   
RecR Family 0.00027 0 No_clan 0 98 129 A
Ribosomal_L33 Family O75394_14-60 0.00000026 1 CL0167 1 16 60 A   
Ribosomal_L34 Family Q9BQ48_50-92 2e-19 1 No_clan 2 50 92 A   
Ribosomal_L35p Family Q9NZE8_102-162 3.8e-16 1 No_clan 3 102 162 A   
PDCD9 Family Q9BZE1_190-420 0.0000000067 1 CL0236 5 195 420 A   
MRP-L28 Family Q9NQ50_83-181 3.4e-37 1 No_clan 8 83 181 B   
MRP-L27 Family Q8IXM3_15-127 7.7e-40 1 No_clan 9 15 127 A   
MRP-S32 Family 0.000000000000017 1 No_clan a 47 105
MRP-S32 Family 0.000000000000026 1 No_clan a 77 142 A
Ribosomal_L3 Family P09001_113-340 5.3e-57 1 CL0575 E 112 340 AB   
MRP-L46 Family Q9H2W6_45-153 0.000000000000028 1 CL0261 e 45 152 A   
Ribosomal_L4 Family Q9BYD3_80-272 6.7e-55 1 No_clan F 80 272 AB   
Ribosomal_S10 Family 0.0000034 1 No_clan f 92 150 AB
Ribosomal_S10 Family 0.000038 1 No_clan f 132 187 A
MRP-L51 Family Q4U2R6_38-126 2.2e-36 1 No_clan i 38 126 A   
Ribosomal_L10 Family Q7Z7H8_81-171 0.000000089 1 No_clan I 81 171 A   
Ribosomal_L13 Family Q9BYD1_17-141 1.9e-45 1 No_clan K 17 141 A   
MRP_L53 Family Q96EL3_20-71 0.000000000022 1 No_clan k 20 71 A   
Ribosomal_L27A Family Q9P015_45-176 2e-28 1 CL0588 M 45 176 A   
Mitoc_L55 Family Q7Z7F7_34-78 1.4e-25 1 No_clan m 34 78 A   
Ribosomal_L16 Family Q9NX20_57-190 3.2e-30 1 No_clan N 57 190 A   
MRP-63 Family Q9BQC6_24-101 8.7e-29 1 No_clan o 24 101 A   
Ribosomal_L17 Family Q9NRX2_28-125 3.5e-25 1 No_clan O 28 125 A   
Ribosomal_L18p Family Q9H0U6_59-168 0.0000000056 1 CL0267 P 59 169 AB   
RF-1 Family Q14197_71-193 0.00068 0 CL0337 p 57 193 AB   
CR6_interact Family Q8TAE8_25-152 3.4e-41 1 No_clan q 25 152 A   
Ribosomal_L19 Family P49406_93-197 1.4e-17 1 CL0107 Q 93 198 A   
Ribosomal_L20 Family Q9BYC9_11-116 1.5e-36 1 No_clan R 11 116 A   
Ribosomal_S18 Family Q9NVS2_77-128 2.2e-16 1 No_clan r 77 128 A   
PDCD9 Family Q9NP92_41-429 9.5e-178 1 CL0236 s 41 429 A   
Ribosomal_L21p Family Q7Z2W9_95-198 7.2e-23 1 No_clan S 95 198 A   
RsfS Family Q96EH3_95-194 7.8e-27 1 CL0260 u 95 194 A   
Ribosomal_L23 Family Q16540_28-107 0.00000000000007 1 No_clan U 28 107 A   
Complex1_LYR Family L0R8F8_7-64 0.00000000000025 1 CL0491 v 7 64 A   
ribosomal_L24 Family Q96A35_91-154 0.0000000000019 1 No_clan V 91 154 A   
KOW Family Q96A35_58-88 0.000000021 1 CL0107 V 58 88 A   
Ribosomal_L27 Family Q9P0M9_42-114 4.7e-22 1 No_clan W 40 114 A   
Ribosomal_L28 Family Q13084_76-138 0.00000078 1 No_clan X 76 138 A   
MRP-L47 Family Q9HD33_64-149 3.5e-37 1 CL0346 Y 64 149 A   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5oom.pdb1.pdb:   [ download sequences in FASTA format ]
0 (protein): 
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1 (protein): 
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2 (protein): 
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3 (protein): 
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5 (protein): 
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6 (protein): 
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7 (protein): 
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8 (protein): 
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9 (protein): 
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a (protein): 
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b (protein): 
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c (protein): 
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D (protein): 
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e (protein): 
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F (protein): 
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g (protein): 
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h (protein): 
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I (protein): 
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J (protein): 
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k (protein): 
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L (protein): 
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m (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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v (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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