General information
PDB ID 5OPT
Title STRUCTURE OF KSRP IN CONTEXT OF TRYPANOSOMA CRUZI 40S
PDB header RIBOSOME
Date 2017-08-10
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4
Kind rna
Organism TRYPANOSOMA CRUZI (STRAIN CL BRENER)
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5opt.pdb pqrtuLMOQRSTUVWXYZbfdegaijPklmnoch E 0
Biounits:
5opt.pdb1.pdb pqrtuLMOQRSTUVWXYZbfdegaijPklmnoch E 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
S4 Domain Q4D4S1_106-152 0.0000000000064 1 CL0492 b 106 152 E   
Ribosomal_S5_C Domain Q4DIZ9_166-237 4.1e-25 1 CL0329 d 166 237 E   
Ribosomal_S5 Domain Q4DIZ9_83-147 1.6e-20 1 CL0196 d 83 147 E   
Ribosomal_S8 Domain Q4E0N6_5-130 6.2e-21 1 No_clan e 5 130 E   
RRM_1 Domain Q4DY32_85-140 0.00000027 1 CL0221 h 70 132 E   
RRM_1 Domain Q4DY32_159-222 0.0000031 1 CL0221 h 151 214 E   
Ribosomal_L7Ae Domain Q4CSL1_28-123 2.7e-23 1 CL0101 i 28 123 E   
Ribosomal_S27 Domain Q4D1T6_97-146 5.2e-26 1 CL0167 j 97 146 E   
RS4NT Domain Q4D5P4_2-36 3e-17 1 No_clan L 2 36 E   
S4 Domain Q4D5P4_39-87 0.000000000038 1 CL0492 L 39 87 E   
Ribosomal_S3_C Domain Q4DMK9_104-187 1.4e-20 1 No_clan m 104 187 E   
KH_2 Domain Q4DMK9_19-95 0.000000066 1 CL0007 m 19 95 E   
S10_plectin Domain Q4E088_7-99 5.4e-35 1 No_clan n 7 99 E   
Ribosomal_S7 Domain Q4E0Q3_37-190 1.6e-34 1 No_clan O 37 190 E   
Ribosomal_S13_N Domain Q4DC38_2-60 2.8e-22 1 No_clan R 2 60 E   
Ribosomal_S15 Domain Q4DC38_70-142 0.000000000000048 1 CL0600 R 70 142 E   
Ribosomal_S19 Domain Q4DGZ5_50-134 3.3e-31 1 No_clan t 50 134 E   
Ribosomal_S17 Domain Q4D0U7_88-156 4.9e-23 1 CL0021 X 88 156 E   
Ribosomal_S25 Family Q4DTX6_41-110 6.2e-25 1 CL0123 a 41 110 E   
Ribosomal_S4 Family Q4D4S1_5-105 0.00000019 1 CL0492 b 5 105 E   
Ribosomal_S30 Family Q4DA48_7-60 3.8e-22 1 No_clan c 7 60 E   
Ribosomal_S2 Family Q4CQ63_114-187 0.000000000000011 1 CL0067 f 114 187 E   
Ribosomal_S21e Family Q4E3M0_6-84 1.5e-33 1 No_clan g 6 84 E   
Ribosomal_S17e Family Q4DK40_58-175 7.3e-49 1 No_clan k 58 175 E   
Ribosomal_S4e Family Q4D5P4_92-166 8.6e-24 1 No_clan L 92 166 E   
Ribosomal_S10 Family Q4D6H7_18-112 1.7e-21 1 No_clan l 18 112 E   
40S_S4_C Family Q4D5P4_209-257 1.3e-17 1 No_clan L 209 257 E   
KOW Family Q4D5P4_174-208 0.000014 1 CL0107 L 174 208 E   
Ribosom_S12_S23 Family Q4DTQ1_29-142 2.4e-48 1 CL0021 M 29 142 E   
Ribosomal_S19e Family Q4DJY1_22-151 6.5e-42 1 CL0123 o 22 151 E   
Ribosomal_S6e Family Q4DSU0_1-129 1.5e-42 1 No_clan P 1 129 E   
Ribosomal_S7e Family Q4CUC7_18-201 1.3e-61 1 CL0652 Q 9 192 E   
Ribosomal_S14 Family Q4CXR4_20-57 0.000000000017 1 No_clan q 20 57 E   
Ribosomal_S9 Family Q4DEK4_16-149 7.3e-27 1 CL0329 r 16 149 E   
Ribosomal_S27e Family Q4DN73_29-83 1.4e-23 1 CL0167 S 29 83 E   
Ribosomal_S26e Family Q4CYE4_1-104 9.5e-34 1 No_clan T 1 104 E   
Ribosomal_S13 Family Q4E093_15-127 1.8e-33 1 CL0303 u 15 127 E   
Ribosomal_S28e Family Q4D7C8_45-111 1.9e-30 1 CL0021 U 45 111 E   
Ribosomal_S11 Family Q4D6I5_22-140 1.1e-47 1 CL0267 V 22 140 E   
Ribosomal_S3Ae Family Q4DZ41_22-223 5.4e-70 1 No_clan W 22 223 E   
Ribosomal_S17_N Family Q4D0U7_18-86 7.9e-30 1 No_clan X 18 86 E   
Ribosomal_S24e Family Q4DW38_29-109 4.8e-29 1 No_clan Y 29 110 E   
Ribosomal_S8e Family Q4DU83_2-204 3.3e-46 1 No_clan Z 2 204 E   
WD40 Repeat Q4DTN2_57-95 0.0000000069 1 CL0186 p 99 137 E   
WD40 Repeat Q4DTN2_57-95 0.00000015 1 CL0186 p 186 224 E   
WD40 Repeat Q4DTN2_279-313 0.00000031 1 CL0186 p 57 95 E   
WD40 Repeat Q4DTN2_140-182 0.0000013 1 CL0186 p 140 182 E   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5opt.pdb1.pdb:   [ download sequences in FASTA format ]
a (protein): 
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b (protein): 
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c (protein): 
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d (protein): 
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e (protein): 
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f (protein): 
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g (protein): 
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h (protein): 
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i (protein): 
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j (protein): 
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k (protein): 
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L (protein): 
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m (protein): 
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n (protein): 
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o (protein): 
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p (protein): 
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Q (protein): 
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r (protein): 
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S (protein): 
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t (protein): 
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u (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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