General information
PDB ID 5OQJ
Title STRUCTURE OF YEAST TRANSCRIPTION PRE-INITIATION COMPLEX WITH TFIIH
PDB header TRANSCRIPTION
Date 2017-08-11
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.7
Kind dna
Organism SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5oqj.pdb ABCDEFGHIJKLMOQRUVWX01234567Z NT 0
Biounits:
5oqj.pdb1.pdb ABCDEFGHIJKLMOQRUVWX01234567Z NT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Helicase_C_2 Domain P06839_526-699 4.2e-44 1 CL0023 0 526 700   
HBB Domain P06839_270-415 1.5e-28 1 No_clan 0 270 415   
PH_TFIIH Domain P32776_8-105 1.4e-17 1 CL0266 1 8 105   
BSD Domain P32776_243-300 0.000000034 1 No_clan 1 248 298   
BSD Domain P32776_168-226 0.000043 1 No_clan 1 170 222   
zf-C3HC4_5 Domain Q03290_10-60 2.4e-28 1 CL0229 3 10 60   
Tfb4 Domain Q12004_23-309 3.5e-94 1 CL0128 4 23 309   
C1_4 Domain Q04673_402-456 1.5e-20 1 CL0006 6 402 456   
ERCC3_RAD25_C Domain Q00578_543-770 7.2e-125 1 CL0023 7 543 770 N  H-Bb 
RNA_pol_Rpb1_1 Domain P04050_11-340 9.1e-114 1 No_clan A 11 340 T  L-Bb 
RNA_pol_Rpb1_5 Domain P04050_807-1397 2e-90 1 No_clan A 807 1397 T  L-Bb 
RNA_pol_Rpb1_2 Domain P04050_342-507 1.7e-77 1 No_clan A 342 507   
RNA_pol_Rpb1_6 Domain P04050_873-1056 2.4e-63 1 No_clan A 873 1056   
RNA_pol_Rpb1_3 Domain P04050_510-669 7.7e-47 1 No_clan A 510 669   
RNA_pol_Rpb1_7 Domain P04050_1141-1274 1.6e-36 1 No_clan A 1141 1274   
RNA_pol_Rpb1_4 Domain P04050_693-800 5.2e-35 1 No_clan A 693 800   
RNA_pol_Rpb2_6 Domain P08518_752-1124 8.1e-127 1 CL0410 B 752 1124   
RNA_pol_Rpb2_2 Domain P08518_219-407 2.4e-51 1 No_clan B 219 407   
RNA_pol_Rpb2_7 Domain P08518_1126-1219 1.8e-33 1 No_clan B 1126 1219   
RNA_pol_Rpb2_4 Domain P08518_580-641 1.6e-25 1 No_clan B 580 641   
RNA_pol_Rpb2_3 Domain P08518_481-545 3.3e-20 1 No_clan B 481 545   
RNA_pol_Rpb2_5 Domain P08518_681-745 2.1e-19 1 No_clan B 681 745   
RNA_pol_A_bac Domain P16370_49-171 7e-32 1 No_clan C 49 171   
RNA_pol_L Domain P16370_19-255 6.2e-19 1 CL0509 C 19 255   
RNA_pol_Rpb5_C Domain P20434_142-214 1.5e-31 1 No_clan E 142 214   
RNA_pol_Rpb5_N Domain P20434_6-100 1.1e-29 1 CL0236 E 6 100   
S1 Domain P34087_80-161 6.2e-18 1 CL0021 G 80 161   
SHS2_Rpb7-N Domain P34087_8-79 2.6e-16 1 CL0319 G 8 79   
RNA_POL_M_15KD Domain P27999_4-41 1.2e-17 1 CL0167 I 4 41   
TFIIS_C Domain P27999_73-111 0.000000000000013 1 CL0167 I 73 111   
RNA_pol_N Domain P22139_1-60 5.4e-30 1 No_clan J 1 60   
RNA_pol_L_2 Domain P38902_30-104 1.5e-24 1 CL0509 K 30 104   
DNA_RNApol_7kD Domain P40422_29-60 1.8e-16 1 CL0167 L 29 60   
TFIIB Domain P29055_133-203 1.3e-28 1 CL0065 M 133 203   
TFIIB Domain P29055_239-309 0.00000000000025 1 CL0065 M 239 309   
TF_Zn_Ribbon Domain P29055_22-66 0.00000000000051 1 CL0167 M 22 66   
TBP Domain P13393_154-237 4.3e-33 1 CL0407 O 154 237 NT  L-Bb 
TBP Domain P13393_64-146 1.3e-32 1 CL0407 O 64 146 NT   
TFIIA_gamma_C Domain P32774_61-118 3.5e-25 1 No_clan V 56 118   
TFIIA_gamma_N Domain P32774_6-53 1.2e-22 1 No_clan V 6 53   
TF_Zn_Ribbon Domain P36100_122-171 0.00000000003 1 CL0167 W 122 171   
TFIIE_beta Domain P36145_125-186 0.0000000000000059 1 CL0123 X 124 186   
DEAD_2 Family P06839_71-257 2.7e-58 1 CL0023 0 71 257   
Tfb2 Family 3.2e-35 1 No_clan 2 146 412
Tfb2 Family 1.1e-28 1 No_clan 2 12 134
MAT1 Family Q03290_63-145 2.3e-39 1 No_clan 3 63 145   
Tfb5 Family Q3E7C1_2-64 1.1e-24 1 No_clan 5 2 65   
Ssl1 Family Q04673_129-325 7.3e-84 1 CL0128 6 129 317   
ResIII Family Q00578_359-519 0.000000000028 1 CL0023 7 363 519 N   
RNA_pol_Rpb2_1 Family P08518_42-455 6.9e-72 1 No_clan B 42 455   
RNA_pol_Rpb4 Family P20433_49-218 5.7e-39 1 CL0426 D 49 218   
RNA_pol_Rpb6 Family P20435_79-132 7e-18 1 No_clan F 79 132   
RNA_pol_Rpb8 Family P20436_7-146 1.9e-43 1 CL0021 H 7 146   
TFIIF_alpha Family P41895_327-415 0.0000000077 1 CL0123 Q 98 415   
TFIIF_beta Family P41896_294-351 1.3e-37 1 CL0123 R 136 351   
Tau95 Family 0.00018 0 No_clan R 99 349
TFIIA Family P32773_241-285 1.1e-22 1 No_clan U 47 285 NT  S-Bb 
TFIIA Family P32773_9-48 0.00000000000006 1 No_clan U 9 242   
TFIIE_alpha Family P36100_11-118 6.5e-38 1 CL0123 W 11 118 N  H-Bb 
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5oqj.pdb1.pdb:   [ download sequences in FASTA format ]
N (dna): 
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T (dna): 
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0 (protein): 
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1 (protein): 
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2 (protein): 
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3 (protein): 
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4 (protein): 
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5 (protein): 
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6 (protein): 
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7 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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O (protein): 
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Q (protein): 
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R (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Z (protein): 
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