General information
PDB ID 5TBB
Title POSTCATALYTIC TERNARY COMPLEX OF HUMAN DNA POLYMERASE BETA WITH GAPPED DNA SUBSTRATE, INCORPORATED (-)FTC AND PPI.
PDB header TRANSFERASE/DNA
Date 2016-09-11
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.39
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5tbb.pdb A DPT 0
Biounits:
5tbb.pdb1.pdb A DPT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_pol_B_palm Domain P06746_149-262 2.8e-38 1 CL0260 A 149 262 PT  S-Bb S-Mn L-Bb 
DNA_pol_lambd_f Domain P06746_98-147 2.8e-19 1 CL0198 A 98 147 PT  H-Bb L-Bb 
HHH_8 Domain P06746_12-78 1.4e-18 1 CL0198 A 12 78 DT   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-335 C cytoplasm
A=1-335 C microtubule
A=1-335 C nucleoplasm
A=1-335 C nucleus
A=1-335 C protein-containing complex
A=1-335 C spindle microtubule
A=1-335 F damaged DNA binding
A=1-335 F DNA-(apurinic or apyrimidinic site) endonuclease activity
A=1-335 F DNA-directed DNA polymerase activity
A=1-335 F enzyme binding
A=1-335 F lyase activity
A=1-335 F metal ion binding
A=1-335 F microtubule binding
A=1-335 P aging
A=1-335 P base-excision repair
A=1-335 P base-excision repair, base-free sugar-phosphate removal
A=1-335 P base-excision repair, DNA ligation
A=1-335 P base-excision repair, gap-filling
A=1-335 P cellular response to DNA damage stimulus
A=1-335 P DNA repair
A=1-335 P DNA-dependent DNA replication
A=1-335 P double-strand break repair via nonhomologous end joining
A=1-335 P homeostasis of number of cells
A=1-335 P immunoglobulin heavy chain V-D-J recombination
A=1-335 P inflammatory response
A=1-335 P intrinsic apoptotic signaling pathway in response to DNA damage
A=1-335 P lymph node development
A=1-335 P neuron apoptotic process
A=1-335 P protein deubiquitination
A=1-335 P pyrimidine dimer repair
A=1-335 P response to ethanol
A=1-335 P response to gamma radiation
A=1-335 P response to hyperoxia
A=1-335 P salivary gland morphogenesis
A=1-335 P somatic hypermutation of immunoglobulin genes
A=1-335 P spleen development
Sequences
Download file with secondary structure created by Stride  
5tbb.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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P (dna): 
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T (dna): 
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A (protein): 
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