General information
PDB ID 5TZS
Title ARCHITECTURE OF THE YEAST SMALL SUBUNIT PROCESSOME
PDB header TRANSLATION
Date 2016-11-22
Experimental method ELECTRON MICROSCOPY
Resolution (A) 5.1
Kind rna
Organism SACCHAROMYCES CEREVISIAE S288C
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CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5tzs.pdb 356789CDEFGHIJKMNOPQRSTUVWXYZabcdefghijklmnopqrstuvy 012ABz 0
Biounits:
5tzs.pdb1.pdb 356789CDEFGHIJKMNOPQRSTUVWXYZabcdefghijklmnopqrstuvy 012ABz 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RS4NT Domain P0CX35_11-39 1e-13 1 No_clan 5 11 39 1   
S4 Domain P0CX35_42-90 1.4e-08 1 CL0492 5 42 90   
Ribosomal_S7 Domain P26783_76-225 4.2e-37 1 No_clan 6 72 225 1   
S4 Domain O13516_107-153 3.3e-12 1 CL0492 9 107 153   
Ribosomal_S17 Domain P0CX47_73-141 7.3e-28 1 CL0021 D 73 141 1   
Ribosomal_L7Ae Domain P39990_18-112 1e-27 1 CL0101 e 18 112 2   
Ribosomal_S8 Domain P0C0W1_5-130 4.7e-24 1 No_clan E 5 130 2   
Ribosomal_L7Ae Domain P39990_18-112 8.1e-28 1 CL0101 f 18 112 2   
RTC Domain Q08096_9-339 3e-44 1 CL0290 h 9 339   
RTC_insert Domain Q08096_183-284 9.7e-30 1 No_clan h 183 284   
Ribosomal_S6e Family P0CX37_1-126 1.2e-54 1 No_clan 3 1 126 1   
Ribosomal_S4e Family P0CX35_95-169 1.8e-38 1 No_clan 5 95 169 1   
40S_S4_C Family P0CX35_212-259 1.7e-21 1 No_clan 5 212 259   
KOW Family P0CX35_177-211 8.3e-05 1 CL0107 5 177 228   
Ribosomal_S7e Family P26786_5-187 6.4e-80 1 CL0652 7 5 187   
Ribosomal_S8e Family P0CX39_2-184 7.5e-60 1 No_clan 8 2 184 1   
Ribosomal_S9 Family P0CX51_11-119 8.6e-22 1 CL0329 C 11 117 1   
Ribosomal_S17_N Family P0CX47_8-71 7.3e-32 1 No_clan D 8 71 1   
Ribosomal_S24e Family P0CX31_24-93 5.1e-32 1 No_clan F 24 93 2   
Ribosomal_S28e Family Q3E7X9_5-66 5.2e-32 1 CL0021 G 5 66 1   
EMG1 Family Q06287_43-246 1.2e-71 1 CL0098 j 43 246   
EMG1 Family Q06287_43-246 9e-79 1 CL0098 k 43 246 1   
Ribosom_S12_S23 Family P0CX29_43-143 1.4e-26 1 CL0021 r 43 143   
WD40 Repeat Q06506_230-264 4.9e-05 1 CL0186 g 221 264   
WD40 Repeat Q06078_574-613 5.3e-07 1 CL0186 T 574 613   
ANAPC4_WD40 Repeat 9.4e-05 1 CL0186 T 213 304
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5tzs.pdb1.pdb:   [ download sequences in FASTA format ]
3 (protein): 
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5 (protein): 
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6 (protein): 
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7 (protein): 
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8 (protein): 
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9 (protein): 
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C (protein): 
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D (protein): 
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e (protein): 
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f (protein): 
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g (protein): 
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h (protein): 
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I (protein): 
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j (protein): 
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k (protein): 
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l (protein): 
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m (protein): 
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N (protein): 
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o (protein): 
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P (protein): 
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Q (protein): 
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r (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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0 (rna): 
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1 (rna): 
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2 (rna): 
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A (rna): 
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B (rna): 
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z (rna): 
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