General information
PDB ID 5U01
Title COOPERATIVE DNA BINDING BY TWO RELA DIMERS
PDB header TRANSCRIPTION/DNA
Date 2016-11-22
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.5
Kind dna
Organism MUS MUSCULUS, SYNTHESIUM
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5u01.pdb ABCD FE 0
Biounits:
5u01.pdb1.pdb ABCD FE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RHD_DNA_bind Domain Q04207_21-186 7.9e-70 1 CL0073 A 21 186 EF  H-Bb L-Bb L-Mj 
RHD_dimer Domain Q04207_195-291 9.3e-37 1 CL0159 A 195 291 F  L-Bb 
RHD_DNA_bind Domain Q04207_21-186 7.9e-70 1 CL0073 B 21 186 EF  H-Bb L-Bb L-Mj 
RHD_dimer Domain Q04207_195-291 9.3e-37 1 CL0159 B 195 291 E  L-Bb 
RHD_DNA_bind Domain Q04207_21-186 7.9e-70 1 CL0073 C 21 186 EF  H-Bb S-Bb S-Mj L-Bb L-Mj 
RHD_dimer Domain Q04207_195-291 9.3e-37 1 CL0159 C 195 291   
RHD_DNA_bind Domain Q04207_21-186 7.9e-70 1 CL0073 D 21 186 EF  H-Bb H-Mj L-Bb L-Mj 
RHD_dimer Domain Q04207_195-291 9.3e-37 1 CL0159 D 195 291 F  S-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=19-291 C cytoplasm
A/B/C/D=19-291 C cytosol
A/B/C/D=19-291 C glutamatergic synapse
A/B/C/D=19-291 C host cell nucleus
A/B/C/D=19-291 C NF-kappaB complex
A/B/C/D=19-291 C NF-kappaB p50/p65 complex
A/B/C/D=19-291 C nuclear chromatin
A/B/C/D=19-291 C nucleoplasm
A/B/C/D=19-291 C nucleus
A/B/C/D=19-291 C protein-containing complex
A/B/C/D=19-291 C synapse
A/B/C/D=19-291 C transcription regulator complex
A/B/C/D=19-291 F actinin binding
A/B/C/D=19-291 F activating transcription factor binding
A/B/C/D=19-291 F ankyrin repeat binding
A/B/C/D=19-291 F chromatin binding
A/B/C/D=19-291 F chromatin DNA binding
A/B/C/D=19-291 F DNA binding
A/B/C/D=19-291 F DNA-binding transcription activator activity, RNA polymerase II-specific
A/B/C/D=19-291 F DNA-binding transcription factor activity
A/B/C/D=19-291 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/B/C/D=19-291 F DNA-binding transcription repressor activity, RNA polymerase II-specific
A/B/C/D=19-291 F enzyme binding
A/B/C/D=19-291 F histone deacetylase binding
A/B/C/D=19-291 F identical protein binding
A/B/C/D=19-291 F NF-kappaB binding
A/B/C/D=19-291 F peptide binding
A/B/C/D=19-291 F phosphate ion binding
A/B/C/D=19-291 F protein homodimerization activity
A/B/C/D=19-291 F protein kinase binding
A/B/C/D=19-291 F protein N-terminus binding
A/B/C/D=19-291 F protein-containing complex binding
A/B/C/D=19-291 F repressing transcription factor binding
A/B/C/D=19-291 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B/C/D=19-291 F RNA polymerase II core promoter sequence-specific DNA binding
A/B/C/D=19-291 F RNA polymerase II transcription coactivator binding
A/B/C/D=19-291 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
A/B/C/D=19-291 F sequence-specific DNA binding
A/B/C/D=19-291 F transcription factor binding
A/B/C/D=19-291 F transcription regulatory region sequence-specific DNA binding
A/B/C/D=19-291 F ubiquitin protein ligase binding
A/B/C/D=19-291 P acetaldehyde metabolic process
A/B/C/D=19-291 P aging
A/B/C/D=19-291 P animal organ morphogenesis
A/B/C/D=19-291 P cellular response to angiotensin
A/B/C/D=19-291 P cellular response to hepatocyte growth factor stimulus
A/B/C/D=19-291 P cellular response to hydrogen peroxide
A/B/C/D=19-291 P cellular response to interleukin-1
A/B/C/D=19-291 P cellular response to interleukin-6
A/B/C/D=19-291 P cellular response to lipopolysaccharide
A/B/C/D=19-291 P cellular response to lipoteichoic acid
A/B/C/D=19-291 P cellular response to nicotine
A/B/C/D=19-291 P cellular response to peptidoglycan
A/B/C/D=19-291 P cellular response to tumor necrosis factor
A/B/C/D=19-291 P cellular response to vascular endothelial growth factor stimulus
A/B/C/D=19-291 P chromatin organization
A/B/C/D=19-291 P cytokine-mediated signaling pathway
A/B/C/D=19-291 P defense response
A/B/C/D=19-291 P hair follicle development
A/B/C/D=19-291 P I-kappaB kinase/NF-kappaB signaling
A/B/C/D=19-291 P inflammatory response
A/B/C/D=19-291 P innate immune response
A/B/C/D=19-291 P interleukin-1-mediated signaling pathway
A/B/C/D=19-291 P liver development
A/B/C/D=19-291 P negative regulation of apoptotic process
A/B/C/D=19-291 P negative regulation of extrinsic apoptotic signaling pathway
A/B/C/D=19-291 P negative regulation of insulin receptor signaling pathway
A/B/C/D=19-291 P negative regulation of NIK/NF-kappaB signaling
A/B/C/D=19-291 P negative regulation of pri-miRNA transcription by RNA polymerase II
A/B/C/D=19-291 P negative regulation of protein catabolic process
A/B/C/D=19-291 P negative regulation of protein sumoylation
A/B/C/D=19-291 P negative regulation of transcription by RNA polymerase II
A/B/C/D=19-291 P negative regulation of transcription, DNA-templated
A/B/C/D=19-291 P NIK/NF-kappaB signaling
A/B/C/D=19-291 P nucleotide-binding oligomerization domain containing 2 signaling pathway
A/B/C/D=19-291 P positive regulation of amyloid-beta formation
A/B/C/D=19-291 P positive regulation of cell population proliferation
A/B/C/D=19-291 P positive regulation of chondrocyte differentiation
A/B/C/D=19-291 P positive regulation of I-kappaB kinase/NF-kappaB signaling
A/B/C/D=19-291 P positive regulation of interleukin-12 production
A/B/C/D=19-291 P positive regulation of interleukin-8 production
A/B/C/D=19-291 P positive regulation of leukocyte adhesion to vascular endothelial cell
A/B/C/D=19-291 P positive regulation of miRNA metabolic process
A/B/C/D=19-291 P positive regulation of NF-kappaB transcription factor activity
A/B/C/D=19-291 P positive regulation of NIK/NF-kappaB signaling
A/B/C/D=19-291 P positive regulation of pri-miRNA transcription by RNA polymerase II
A/B/C/D=19-291 P positive regulation of Schwann cell differentiation
A/B/C/D=19-291 P positive regulation of T cell receptor signaling pathway
A/B/C/D=19-291 P positive regulation of transcription by RNA polymerase II
A/B/C/D=19-291 P positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus
A/B/C/D=19-291 P positive regulation of transcription, DNA-templated
A/B/C/D=19-291 P postsynapse to nucleus signaling pathway
A/B/C/D=19-291 P regulation of DNA-templated transcription in response to stress
A/B/C/D=19-291 P regulation of inflammatory response
A/B/C/D=19-291 P regulation of NIK/NF-kappaB signaling
A/B/C/D=19-291 P regulation of transcription, DNA-templated
A/B/C/D=19-291 P response to amino acid
A/B/C/D=19-291 P response to bacterium
A/B/C/D=19-291 P response to cAMP
A/B/C/D=19-291 P response to cobalamin
A/B/C/D=19-291 P response to cytokine
A/B/C/D=19-291 P response to drug
A/B/C/D=19-291 P response to insulin
A/B/C/D=19-291 P response to interleukin-1
A/B/C/D=19-291 P response to morphine
A/B/C/D=19-291 P response to muramyl dipeptide
A/B/C/D=19-291 P response to muscle stretch
A/B/C/D=19-291 P response to organic substance
A/B/C/D=19-291 P response to progesterone
A/B/C/D=19-291 P response to UV-B
A/B/C/D=19-291 P transcription, DNA-templated
A/B/C/D=19-291 P tumor necrosis factor-mediated signaling pathway
Sequences
Download file with secondary structure created by Stride  
5u01.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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