General information
PDB ID 5U1C
Title STRUCTURE OF TETRAMERIC HIV-1 STRAND TRANSFER COMPLEX INTASOME
PDB header VIRAL PROTEIN
Date 2016-11-28
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.9
Kind dna
Organism HOMO SAPIENS, HUMAN IMMUNODEFICIENCY VIRUS 1, HUMAN IMMUNODEFICIENCY VIRUS 1, HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5u1c.pdb ABCD GEFHIJ 0
Biounits:
5u1c.pdb1.pdb ABCD GEFHIJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
IN_DBD_C Domain P12497_1372-1415 5.1e-19 1 CL0010 A 225 268 FIJ  H-Bb S-Bb 
Integrase_Zn Domain P12497_1155-1192 3e-16 1 No_clan A 8 45   
rve Domain P12497_1202-1292 1.4e-13 1 CL0219 A 54 145 FGIJ  H-Bb L-Bb L-Mj 
IN_DBD_C Domain P12497_1372-1415 2.7e-19 1 CL0010 B 225 268 EI  S-Bb L-Bb 
rve Domain P12497_1203-1281 2.2e-10 1 CL0219 B 56 158   
IN_DBD_C Domain P12497_1372-1415 5.1e-19 1 CL0010 C 225 268 EFJ  H-Bb S-Bb 
Integrase_Zn Domain P12497_1155-1192 3e-16 1 No_clan C 8 45   
rve Domain P12497_1202-1292 1.4e-13 1 CL0219 C 54 145 EFHJ  H-Bb L-Bb L-Mj 
IN_DBD_C Domain P12497_1372-1415 2.7e-19 1 CL0010 D 225 268 EI  S-Bb L-Bb 
rve Domain P12497_1203-1281 2.2e-10 1 CL0219 D 56 158   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-64 C cytoplasm
A/B/C/D=1-64 F DNA binding
A/B/C/D=1-64 F endoribonuclease activity
A/B/C/D=1132-1136, A/B/C/D=1148-1435 C host cell nucleus
A/B/C/D=1132-1136, A/B/C/D=1148-1435 C host cell plasma membrane
A/B/C/D=1132-1136, A/B/C/D=1148-1435 C host multivesicular body
A/B/C/D=1132-1136, A/B/C/D=1148-1435 C viral nucleocapsid
A/B/C/D=1132-1136, A/B/C/D=1148-1435 C virion membrane
A/B/C/D=1132-1136, A/B/C/D=1148-1435 F aspartic-type endopeptidase activity
A/B/C/D=1132-1136, A/B/C/D=1148-1435 F DNA binding
A/B/C/D=1132-1136, A/B/C/D=1148-1435 F DNA-directed DNA polymerase activity
A/B/C/D=1132-1136, A/B/C/D=1148-1435 F exoribonuclease H activity
A/B/C/D=1132-1136, A/B/C/D=1148-1435 F identical protein binding
A/B/C/D=1132-1136, A/B/C/D=1148-1435 F lipid binding
A/B/C/D=1132-1136, A/B/C/D=1148-1435 F phosphatidylinositol-4,5-bisphosphate binding
A/B/C/D=1132-1136, A/B/C/D=1148-1435 F RNA binding
A/B/C/D=1132-1136, A/B/C/D=1148-1435 F RNA-directed DNA polymerase activity
A/B/C/D=1132-1136, A/B/C/D=1148-1435 F RNA-DNA hybrid ribonuclease activity
A/B/C/D=1132-1136, A/B/C/D=1148-1435 F structural molecule activity
A/B/C/D=1132-1136, A/B/C/D=1148-1435 F zinc ion binding
A/B/C/D=1132-1136, A/B/C/D=1148-1435 P DNA integration
A/B/C/D=1132-1136, A/B/C/D=1148-1435 P DNA recombination
A/B/C/D=1132-1136, A/B/C/D=1148-1435 P establishment of integrated proviral latency
A/B/C/D=1132-1136, A/B/C/D=1148-1435 P induction by virus of host cysteine-type endopeptidase activity involved in apoptotic process
A/B/C/D=1132-1136, A/B/C/D=1148-1435 P suppression by virus of host gene expression
A/B/C/D=1132-1136, A/B/C/D=1148-1435 P viral entry into host cell
A/B/C/D=1132-1136, A/B/C/D=1148-1435 P viral genome integration into host DNA
A/B/C/D=1132-1136, A/B/C/D=1148-1435 P viral penetration into host nucleus
Sequences
Download file with secondary structure created by Stride  
5u1c.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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