General information
PDB ID 5UND
Title CRYSTAL STRUCTURE OF CTCF(ZNF 4-10) WITH 28-MER DNA
PDB header TRANSCRIPTION/DNA
Date 2017-01-30
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.55
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5und.pdb AB CDEF 0
Biounits:
5und.pdb1.pdb A CD 1
5und.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-H2C2_2 Domain P49711_364-388 2e-09 0 CL0361 A 365 389 D  H-Bb H-Mj L-Bb 
zf-H2C2_2 Domain P49711_392-417 5.6e-08 0 CL0361 A 393 418 CD  H-Bb H-Mj S-Bb L-Mj 
zf-H2C2_2 Domain P49711_482-507 1.6e-05 0 CL0361 A 481 506   
zf-H2C2_2 Domain P49711_364-388 1.6e-09 0 CL0361 B 365 389 F  H-Bb H-Mj L-Bb 
zf-H2C2_2 Domain P49711_392-417 4.3e-08 0 CL0361 B 393 418 EF  H-Bb H-Mj S-Bb L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=348-547 C chromosome, centromeric region
A/B=348-547 C condensed chromosome
A/B=348-547 C nucleolus
A/B=348-547 C nucleoplasm
A/B=348-547 C nucleus
A/B=348-547 F chromatin insulator sequence binding
A/B=348-547 F DNA-binding transcription factor activity
A/B=348-547 F DNA-binding transcription repressor activity, RNA polymerase II-specific
A/B=348-547 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=348-547 F sequence-specific DNA binding
A/B=348-547 F transcription regulatory region sequence-specific DNA binding
A/B=348-547 F zinc ion binding
A/B=348-547 P chromosome segregation
A/B=348-547 P DNA methylation
A/B=348-547 P maintenance of DNA methylation
A/B=348-547 P negative regulation of cell population proliferation
A/B=348-547 P negative regulation of transcription by RNA polymerase II
A/B=348-547 P negative regulation of transcription, DNA-templated
A/B=348-547 P nucleosome positioning
A/B=348-547 P positive regulation of gene expression
A/B=348-547 P positive regulation of transcription by RNA polymerase II
A/B=348-547 P positive regulation of transcription, DNA-templated
A/B=348-547 P protein localization to chromosome, centromeric region
A/B=348-547 P regulation of centromeric sister chromatid cohesion
A/B=348-547 P regulation of gene expression by genetic imprinting
A/B=348-547 P regulation of gene expression, epigenetic
A/B=348-547 P regulation of histone acetylation
A/B=348-547 P regulation of histone methylation
A/B=348-547 P regulation of molecular function, epigenetic
Sequences
Download file with secondary structure created by Stride  
5und.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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5und.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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