General information
PDB ID 5V3J
Title MOUSEZFP568-ZNF1-10 IN COMPLEX WITH DNA
PDB header TRANSFERASE/DNA
Date 2017-03-07
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.06
Kind dna
Organism MUS, MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5v3j.pdb EF ABCD 0
Biounits:
5v3j.pdb1.pdb E AB 1
5v3j.pdb2.pdb F CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-H2C2_2 Domain E9PYI1_434-459 2.3e-08 0 CL0361 E 433 458 A  H-Bb H-Mj L-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_518-543 8.7e-08 0 CL0361 E 517 542 AB  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_602-627 9e-08 0 CL0361 E 601 626 A  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_574-599 1.8e-07 0 CL0361 E 573 598 AB  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_546-571 1.2e-06 0 CL0361 E 545 570 A  H-Bb H-Mj L-Bb 
zf-H2C2_2 Domain E9PYI1_490-515 2.2e-06 0 CL0361 E 489 514 AB  H-Mj S-Bb L-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_378-403 4.6e-06 0 CL0361 E 377 402 B  L-Bb 
HVO_2753_ZBP Domain E9PYI1_569-622 0.00077 0 CL0167 E 568 621 AB  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_434-459 2.3e-08 0 CL0361 F 433 458 C  H-Bb H-Mj L-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_518-543 8.8e-08 0 CL0361 F 517 542 CD  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_602-627 9.1e-08 0 CL0361 F 601 626 C  H-Mj S-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_574-599 1.8e-07 0 CL0361 F 573 598 CD  H-Bb H-Mj L-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_546-571 1.2e-06 0 CL0361 F 545 570 C  H-Bb H-Mj L-Bb 
zf-H2C2_2 Domain E9PYI1_490-515 2.2e-06 0 CL0361 F 489 514 CD  H-Mj S-Bb L-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_378-403 4.6e-06 0 CL0361 F 377 402 D  L-Bb 
HVO_2753_ZBP Domain E9PYI1_569-622 0.00077 0 CL0167 F 568 621 CD  H-Bb H-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
E/F=362-640 C nucleus
E/F=362-640 F metal ion binding
E/F=362-640 F transcription corepressor binding
E/F=362-640 F transcription regulatory region sequence-specific DNA binding
E/F=362-640 P convergent extension involved in axis elongation
E/F=362-640 P convergent extension involved in neural plate elongation
E/F=362-640 P embryonic placenta morphogenesis
E/F=362-640 P in utero embryonic development
E/F=362-640 P negative regulation of transcription by RNA polymerase II
E/F=362-640 P negative regulation of transcription, DNA-templated
E/F=362-640 P regulation of cell communication
Sequences
Download file with secondary structure created by Stride  
5v3j.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
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B (dna): 
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E (protein): 
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5v3j.pdb2.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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F (protein): 
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