General information
PDB ID 5VC9
Title ZINC FINGER OF HUMAN CXXC4 IN COMPLEX WITH CPG DNA
PDB header DNA BINDING PROTEIN
Date 2017-03-31
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.1
Kind dna
Organism SYNTHETIC CONSTRUCT, HOMO SAPIENS
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5vc9.pdb CF ABDE 0
Biounits:
5vc9.pdb1.pdb C AB 1
5vc9.pdb2.pdb F DE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-CXXC Domain Q9H2H0_134-172 1.8e-08 1 No_clan C 134 172 AB  H-Bb H-Mj L-Bb L-Mj 
zf-CXXC Domain Q9H2H0_134-172 1.5e-08 1 No_clan F 134 172 DE  H-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
C/F=133-180 C cytoplasm
C/F=133-180 C cytoplasmic vesicle
C/F=133-180 F methyl-CpG binding
C/F=133-180 F PDZ domain binding
C/F=133-180 F zinc ion binding
C/F=133-180 P negative regulation of Wnt signaling pathway
C/F=133-180 P Wnt signaling pathway
C/F=133-180 P zygotic specification of dorsal/ventral axis
Sequences
Download file with secondary structure created by Stride  
5vc9.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
Click "SHOW" for view sequence
B (dna): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
5vc9.pdb2.pdb:   [ download sequences in FASTA format ]
D (dna): 
Click "SHOW" for view sequence
E (dna): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text