General information
PDB ID 5VFX
Title STRUCTURE OF AN ACCESSORY PROTEIN OF THE PCW3 RELAXOSOME IN COMPLEX WITH THE ORIGIN OF TRANSFER (ORIT) DNA
PDB header DNA BINDING PROTEIN/DNA
Date 2017-04-10
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.81
Kind dna
Organism CLOSTRIDIUM PERFRINGENS
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complex
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5vfx.pdb ABCDEFGH IJKLMNOP 0
Biounits:
5vfx.pdb1.pdb ABCD IJKL 1
5vfx.pdb2.pdb EFGH MNOP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HTH_56 Domain Q1PLI2_13-93 3.7e-06 1 CL0123 A 14 93 IJ  H-Bb S-Bb S-Mj L-Bb L-Mj L-Mn 
HTH_56 Domain Q1PLI2_13-93 3.7e-06 1 CL0123 B 14 93 KL  S-Bb S-Mj L-Bb 
HTH_56 Domain Q1PLI2_13-93 3.7e-06 1 CL0123 C 14 93 KL  H-Bb S-Bb S-Mj L-Bb L-Mj 
HTH_56 Domain Q1PLI2_13-93 3.5e-06 1 CL0123 D 13 93 IJ  S-Bb S-Mj L-Bb L-Mn 
HTH_56 Domain Q1PLI2_13-93 3.7e-06 1 CL0123 E 14 93 MN  H-Bb S-Bb S-Mj L-Bb L-Mj L-Mn 
HTH_56 Domain Q1PLI2_13-93 3.8e-06 1 CL0123 F 14 93 OP  S-Bb S-Mj L-Bb L-Mj L-Mn 
HTH_56 Domain Q1PLI2_13-93 3.7e-06 1 CL0123 G 14 93 OP  H-Bb S-Bb S-Mj L-Bb L-Mj 
HTH_56 Domain Q1PLI2_13-93 3.6e-06 1 CL0123 H 14 93 MN  S-Bb S-Mj L-Bb 
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5vfx.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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K (dna): 
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L (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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5vfx.pdb2.pdb:   [ download sequences in FASTA format ]
M (dna): 
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N (dna): 
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O (dna): 
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P (dna): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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