General information
PDB ID 5VI5
Title STRUCTURE OF MYCOBACTERIUM SMEGMATIS TRANSCRIPTION INITIATION COMPLEX WITH A FULL TRANSCRIPTION BUBBLE
PDB header TRANSCRIPTION
Date 2017-04-14
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.2
Kind hybrid
Organism SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5vi5.pdb ABCDEFJ OP Q 0
Biounits:
5vi5.pdb1.pdb ABCDEFJ OP Q 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain A0QSL8_52-152 5.3e-26 1 No_clan A 52 169   
RNA_pol_L Domain A0QSL8_24-219 3.2e-20 1 CL0509 A 24 219   
RNA_pol_A_bac Domain A0QSL8_52-152 6.1e-26 1 No_clan B 52 169   
RNA_pol_L Domain A0QSL8_24-219 4e-20 1 CL0509 B 24 219   
RNA_pol_Rpb2_6 Domain P60281_634-1053 8.3e-159 1 CL0410 C 634 1053 PQ   
RNA_pol_Rpb2_3 Domain P60281_429-497 4.9e-29 1 No_clan C 429 497 OQP  L-Bb 
RNA_pol_Rpb2_45 Domain P60281_507-573 2.5e-28 1 No_clan C 507 573   
RNA_pol_Rpb2_7 Domain P60281_1055-1131 5.9e-26 1 No_clan C 1055 1131 P   
RNA_pol_Rpb2_2 Domain P60281_172-370 2.2e-20 1 No_clan C 172 370 O   
RNA_pol_Rpb1_1 Domain A0QS66_4-417 2.3e-82 1 No_clan D 4 417 OP  H-Bb L-Bb 
RNA_pol_Rpb1_5 Domain 6e-37 1 No_clan D 842 1028 P
RNA_pol_Rpb1_2 Domain A0QS66_419-561 5.8e-36 1 No_clan D 419 561 PQ   
RNA_pol_Rpb1_3 Domain A0QS66_564-735 4.8e-27 1 No_clan D 564 735   
RNA_pol_Rpb1_5 Domain 0.000000000000009 1 No_clan D 1056 1219
RNA_pol_Rpb1_4 Domain A0QS66_748-841 0.0000009 1 No_clan D 742 841   
Sigma70_r2 Domain A0QW02_233-303 8.9e-23 1 CL0123 F 233 303 O  H-Bb H-Mj H-Mn 
Sigma70_r4 Domain A0QW02_401-454 1.3e-18 1 CL0123 F 401 454 OP  H-Bb H-Mj L-Bb L-Mj 
RNA_pol_Rpb2_1 Family P60281_43-416 3.2e-22 1 No_clan C 43 416 O   
RNA_pol_Rpb6 Family A0QWT1_39-102 0.000000000000055 1 No_clan E 39 102   
Sigma70_r3 Family A0QW02_312-389 3.4e-23 1 CL0123 F 312 389 P  H-Bb 
Sigma70_r1_2 Family A0QW02_164-197 2.4e-16 1 No_clan F 164 197 O   
RbpA Family A0QZ11_26-106 3e-29 1 No_clan J 26 106 O  L-Bb 
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5vi5.pdb1.pdb:   [ download sequences in FASTA format ]
O (dna): 
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P (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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J (protein): 
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Q (rna): 
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