General information
PDB ID 5VT0
Title ESCHERICHIA COLI 6S RNA DERIVATIVE IN COMPLEX WITH ESCHERICHIA COLI RNA POLYMERASE SIGMA70-HOLOENZYME
PDB header TRANSCRIPTION/RNA
Date 2017-05-15
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.78
Kind rna
Organism ESCHERICHIA COLI (STRAIN K12)
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5vt0.pdb GHIJKL R 0
Biounits:
5vt0.pdb1.pdb GHIJKL R 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_L Domain P0A7Z4_29-228 1.2e-24 1 CL0509 G 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 7.5e-24 1 No_clan G 58 185   
RNA_pol_L Domain P0A7Z4_29-228 1.1e-24 1 CL0509 H 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 6.4e-24 1 No_clan H 58 186   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 1.4e-160 1 CL0410 I 717 1264 R   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.5e-30 1 No_clan I 513 581 R   
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 6e-28 1 No_clan I 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 1.9e-27 1 No_clan I 1266 1342   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 0.0000000000000054 1 No_clan I 329 454 R   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 0.00000023 1 No_clan I 151 276 R   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 1.6e-89 1 No_clan J 16 342 R   
RNA_pol_Rpb1_5 Domain P0A8T7_766-1317 6.1e-67 1 No_clan J 766 1317 R   
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 3.6e-27 1 No_clan J 386 486 R   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 4e-27 1 No_clan J 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.7e-18 1 No_clan J 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 0.00000011 1 No_clan J 344 401 R   
Sigma70_ner Domain 1.2e-47 1 CL0123 L 167 348
Sigma70_r2 Domain P00579_379-449 1.2e-21 1 CL0123 L 379 449 R   
Sigma70_r4 Domain P00579_547-600 4.5e-19 1 CL0123 L 547 600 R   
Sigma70_ner Domain 0.0000000034 1 CL0123 L 137 212
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.3e-58 1 No_clan I 26 500 R   
RNA_pol_Rpb6 Family P0A800_8-60 0.0000000000000013 1 No_clan K 8 60   
Sigma70_r3 Family P00579_458-535 2.4e-29 1 CL0123 L 458 535   
Sigma70_r1_2 Family P00579_96-128 0.0000000000013 1 No_clan L 96 128 R   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5vt0.pdb1.pdb:   [ download sequences in FASTA format ]
G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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R (rna): 
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