General information
PDB ID 5W9Q
Title ZINC FINGER REGION OF MBD1 IN COMPLEX WITH CPG DNA
PDB header DNA BINDING PROTEIN/DNA
Date 2017-06-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.8
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5w9q.pdb AB CDEF 0
Biounits:
5w9q.pdb1.pdb A CD 1
5w9q.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-CXXC Domain Q9UIS9_334-377 1e-14 1 No_clan A 333 377 CD  L-Bb L-Mj L-Mn 
zf-CXXC Domain Q9UIS9_334-377 6.3e-12 1 No_clan B 334 377 EF  L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=330-388 C chromosome
A/B=330-388 C host cell nucleus
A/B=330-388 C nuclear matrix
A/B=330-388 C nuclear speck
A/B=330-388 C nucleoplasm
A/B=330-388 C nucleus
A/B=330-388 F DNA binding
A/B=330-388 F double-stranded methylated DNA binding
A/B=330-388 F methyl-CpG binding
A/B=330-388 F unmethylated CpG binding
A/B=330-388 F zinc ion binding
A/B=330-388 P negative regulation of transcription, DNA-templated
A/B=330-388 P transcription by RNA polymerase II
Sequences
Download file with secondary structure created by Stride  
5w9q.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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5w9q.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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