General information
PDB ID 5WJQ
Title MOUSEZFP568-ZNF2-11 IN COMPLEX WITH DNA
PDB header GENE REGULATION/DNA
Date 2017-07-24
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.79
Kind dna
Organism MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5wjq.pdb D AB 0
Biounits:
5wjq.pdb1.pdb D AB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-H2C2_2 Domain E9PYI1_632-657 1.2e-09 0 CL0361 D 629 654 A  H-Bb H-Mj L-Mj 
zf-H2C2_2 Domain E9PYI1_434-459 2.4e-08 0 CL0361 D 433 458 A  H-Bb H-Mj L-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_518-543 8.9e-08 0 CL0361 D 517 542 AB  H-Bb H-Mj S-Bb L-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_602-627 9.2e-08 0 CL0361 D 601 626 AB  H-Bb H-Mj L-Mj 
zf-H2C2_2 Domain E9PYI1_574-599 1.9e-07 0 CL0361 D 573 598 AB  H-Bb H-Mj L-Bb L-Mj 
zf-H2C2_2 Domain E9PYI1_546-571 1.2e-06 0 CL0361 D 545 570 A  H-Bb H-Mj 
zf-H2C2_2 Domain E9PYI1_490-515 2.2e-06 0 CL0361 D 489 514 AB  H-Mj L-Bb L-Mj 
zf-C2H2 Domain E9PYI1_391-413 4.3e-05 1 CL0361 D 391 413 A  H-Bb 
HVO_2753_ZBP Domain E9PYI1_569-622 0.00079 0 CL0167 D 568 621 AB  H-Bb H-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
D=388-668 C nucleus
D=388-668 F metal ion binding
D=388-668 F transcription corepressor binding
D=388-668 F transcription regulatory region sequence-specific DNA binding
D=388-668 P convergent extension involved in axis elongation
D=388-668 P convergent extension involved in neural plate elongation
D=388-668 P embryonic placenta morphogenesis
D=388-668 P in utero embryonic development
D=388-668 P negative regulation of transcription by RNA polymerase II
D=388-668 P negative regulation of transcription, DNA-templated
D=388-668 P regulation of cell communication
Sequences
Download file with secondary structure created by Stride  
5wjq.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
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B (dna): 
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D (protein): 
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