General information
PDB ID 5WSG
Title CRYO-EM STRUCTURE OF THE CATALYTIC STEP II SPLICEOSOME (C* COMPLEX) AT 4.0 ANGSTROM RESOLUTION
PDB header RNA BINDING PROTEIN/RNA
Date 2016-12-07
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4
Kind rna
Organism SACCHAROMYCES CEREVISIAE S288C
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5wsg.pdb ACJOPQRSTZcdIvnopqrtkihjlmgFGHKUVWXYef BNDELMb 0
Biounits:
5wsg.pdb1.pdb ACJOPQRSTZcdIvnopqrtkihjlmgFGHKUVWXYef BNDELMb 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PROCN Domain P33334_470-874 1.8e-218 1 No_clan A 470 874 BDEL   
PRP8_domainIV Domain P33334_1840-2061 9.6e-118 1 No_clan A 1824 2061 bEML   
U6-snRNA_bdg Domain P33334_1514-1672 2.5e-85 1 CL0363 A 1514 1672 bL   
PRO8NT Domain P33334_131-282 2.3e-79 1 No_clan A 131 282 DE   
U5_2-snRNA_bdg Domain P33334_1282-1415 3.2e-69 1 No_clan A 1282 1415 Bb   
RRM_4 Domain P33334_1059-1150 2.6e-47 1 No_clan A 1059 1150 L   
GTP_EFTU Domain P36048_131-442 2.9e-36 1 CL0023 C 131 443 ED   
GTP_EFTU_D2 Domain P36048_481-578 3.3e-16 1 CL0575 C 481 578   
EFG_C Domain P36048_856-948 1.2e-14 1 CL0437 C 856 948   
EFG_IV Domain P36048_738-854 6.4e-13 1 CL0329 C 738 854   
Myb_DNA-binding Domain Q03654_10-56 3.2e-12 1 CL0123 c 10 56 EL   
Myb_DNA-binding Domain Q03654_63-106 3.8e-07 1 CL0123 c 63 106 D   
HA2 Domain P15938_757-845 1.4e-20 1 No_clan e 757 845   
OB_NTP_bind Domain P15938_903-978 1.4e-15 1 CL0021 e 903 982   
DEAD Domain P15938_353-516 2.2e-08 1 CL0023 e 353 516   
LSM Domain P40018_10-97 1.9e-22 1 CL0527 F 10 97 L   
LSM Domain Q06217_37-106 1e-17 1 CL0527 g 37 106 DL   
LSM Domain Q12330_19-92 2e-16 1 CL0527 G 19 92 DL   
LSM Domain P54999_17-83 2.1e-18 1 CL0527 H 17 83 DL   
LSM Domain P54999_17-83 2.1e-18 1 CL0527 H 17 83 DL   
LSM Domain P54999_17-83 2.1e-18 1 CL0527 h 17 83 DL   
LSM Domain P54999_17-83 2.1e-18 1 CL0527 h 17 83 DL   
LSM Domain Q12330_19-92 2e-16 1 CL0527 i 19 92 DL   
SYF2 Domain P53277_92-211 2.1e-07 1 No_clan I 93 210 LE   
LSM Domain P40204_5-73 3.6e-16 1 CL0527 j 5 73 BD   
LSM Domain P40018_10-97 2.1e-22 1 CL0527 k 10 97 DL   
LSM Domain P40204_5-73 3.6e-16 1 CL0527 K 5 73 DL   
LSM Domain P43321_9-74 2.1e-16 1 CL0527 l 9 74 D   
LSM Domain Q02260_5-97 6.1e-27 1 CL0527 m 5 97 D   
Prp19 Domain P32523_77-139 5.9e-26 1 No_clan o 62 139   
U-box Domain 0.0001 1 CL0229 o 1 84
Prp19 Domain P32523_77-139 6.2e-26 1 No_clan p 62 139 DE   
U-box Domain 0.00011 1 CL0229 p 1 84
Prp19 Domain P32523_77-139 2.2e-25 1 No_clan q 59 139   
Torus Domain Q12046_4-114 5e-33 1 CL0537 R 4 114 E   
Prp19 Domain P32523_77-139 5.8e-26 1 No_clan r 62 139 EN   
RRM_1 Domain Q12046_149-206 3.7e-06 1 CL0221 R 149 206 EN   
U-box Domain 0.00012 1 CL0229 r 1 85 E
G10 Domain P25337_1-155 6.1e-64 1 No_clan T 1 155 DE   
LSM Domain P43321_9-74 2.1e-16 1 CL0527 U 9 74 L   
LSM Domain Q02260_5-97 6.1e-27 1 CL0527 V 5 97 L   
LSM Domain Q06217_44-106 2.5e-17 1 CL0527 W 44 106 L   
RRM_5 Domain P40567_29-110 8.2e-09 1 CL0221 X 29 110 L   
HAT Family Q12309_180-211 1.1e-06 1 CL0020 d 180 211   
Helicase_C Family P15938_549-694 3.6e-14 1 CL0023 e 549 694   
Prp18 Family P33411_114-246 1.4e-19 1 No_clan f 114 246   
SKIP_SNW Family P28004_90-247 6.2e-38 1 No_clan P 88 247 DLE   
Cwf_Cwc_15 Family Q03772_4-126 2.4e-05 0 No_clan S 4 133 DEL   
Cwf_Cwc_15 Family 0.0001 0 No_clan S 126 175
BCAS2 Family 0.00026 0 No_clan t 1 175 DE
MA3 Family P53333_291-398 5.8e-26 1 CL0020 Z 291 398   
WD40 Repeat P40968_286-321 1.1e-06 1 CL0186 n 275 321   
WD40 Repeat P40968_197-234 1.9e-06 1 CL0186 n 192 234 L   
WD40 Repeat P40968_197-234 6.9e-05 1 CL0186 n 152 191   
WD40 Repeat Q12417_172-210 1.5e-05 1 CL0186 O 214 252 E   
WD40 Repeat Q12417_172-210 3.1e-05 1 CL0186 O 129 168   
WD40 Repeat Q12417_172-210 0.00026 1 CL0186 O 172 210   
WD40 Repeat Q12417_172-210 0.00058 1 CL0186 O 256 294   
LRR_9 Repeat Q08963_33-162 6.5e-07 0 CL0022 Y 51 162   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5wsg.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
d (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
i (protein): 
Click "SHOW" for view sequence
j (protein): 
Click "SHOW" for view sequence
K (protein): 
Click "SHOW" for view sequence
l (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
p (protein): 
Click "SHOW" for view sequence
Q (protein): 
Click "SHOW" for view sequence
r (protein): 
Click "SHOW" for view sequence
S (protein): 
Click "SHOW" for view sequence
t (protein): 
Click "SHOW" for view sequence
U (protein): 
Click "SHOW" for view sequence
v (protein): 
Click "SHOW" for view sequence
W (protein): 
Click "SHOW" for view sequence
X (protein): 
Click "SHOW" for view sequence
Y (protein): 
Click "SHOW" for view sequence
Z (protein): 
Click "SHOW" for view sequence
b (rna): 
Click "SHOW" for view sequence
E (rna): 
Click "SHOW" for view sequence
M (rna): 
Click "SHOW" for view sequence
N (rna): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text