General information
PDB ID 5X6M
Title CRYSTAL STRUCTURE OF SMAD5-MH1 IN COMPLEX WITH A COMPOSITE DNA SEQUENCE
PDB header METAL BINDING PROTEIN/DNA
Date 2017-02-22
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.2
Kind dna
Organism MUS MUSCULUS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5x6m.pdb BAEF CDGH 0
Biounits:
5x6m.pdb1.pdb BAEF CDGH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
MH1 Domain P97454_31-132 2.4e-43 1 CL0263 A 31 132 CD  H-Bb S-Bb S-Mj L-Bb L-Mj 
MH1 Domain P97454_31-132 2.4e-43 1 CL0263 B 31 132 CD  S-Bb S-Mj L-Bb L-Mj 
MH1 Domain P97454_31-132 2.3e-43 1 CL0263 E 31 132 GH  H-Bb S-Bb S-Mj L-Bb L-Mj 
MH1 Domain P97454_31-132 2.3e-43 1 CL0263 F 31 132 GH  H-Bb S-Bb S-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/E/F=1-143 C cytoplasm
A/B/E/F=1-143 C cytosol
A/B/E/F=1-143 C nucleoplasm
A/B/E/F=1-143 C nucleus
A/B/E/F=1-143 C protein-containing complex
A/B/E/F=1-143 C transcription regulator complex
A/B/E/F=1-143 F DEAD/H-box RNA helicase binding
A/B/E/F=1-143 F DNA-binding transcription repressor activity, RNA polymerase II-specific
A/B/E/F=1-143 F metal ion binding
A/B/E/F=1-143 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B/E/F=1-143 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
A/B/E/F=1-143 F sequence-specific double-stranded DNA binding
A/B/E/F=1-143 F ubiquitin protein ligase binding
A/B/E/F=1-143 P angiogenesis
A/B/E/F=1-143 P BMP signaling pathway
A/B/E/F=1-143 P bone development
A/B/E/F=1-143 P cardiac muscle contraction
A/B/E/F=1-143 P cartilage development
A/B/E/F=1-143 P cellular response to BMP stimulus
A/B/E/F=1-143 P cellular response to organic cyclic compound
A/B/E/F=1-143 P embryonic pattern specification
A/B/E/F=1-143 P erythrocyte differentiation
A/B/E/F=1-143 P germ cell development
A/B/E/F=1-143 P Mullerian duct regression
A/B/E/F=1-143 P negative regulation of transcription by RNA polymerase II
A/B/E/F=1-143 P osteoblast fate commitment
A/B/E/F=1-143 P positive regulation of osteoblast differentiation
A/B/E/F=1-143 P positive regulation of transcription by RNA polymerase II
A/B/E/F=1-143 P positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus
A/B/E/F=1-143 P protein phosphorylation
A/B/E/F=1-143 P SMAD protein signal transduction
A/B/E/F=1-143 P transforming growth factor beta receptor signaling pathway
A/B/E/F=1-143 P ureteric bud development
Sequences
Download file with secondary structure created by Stride  
5x6m.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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G (dna): 
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H (dna): 
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A (protein): 
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B (protein): 
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E (protein): 
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F (protein): 
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