General information
PDB ID 5X8R
Title STRUCTURE OF THE 30S SMALL SUBUNIT OF CHLOROPLAST RIBOSOME FROM SPINACH
PDB header RIBOSOME
Date 2017-03-03
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.7
Kind rna
Organism SPINACIA OLERACEA
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5x8r.pdb bcefghijklmopqrstuywdvnx8 a 0
Biounits:
5x8r.pdb1.pdb bcefghijklmopqrstuywdvnx8 a 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
S1 Domain P29344_257-329 5.7e-23 1 CL0021 8 257 329   
Ribosomal_S3_C Domain P09595_131-213 3.1e-30 1 No_clan c 131 213 a   
S4 Domain P13788_89-136 1.5e-19 1 CL0492 d 89 136 a   
Ribosomal_S5 Domain Q9ST69_152-216 1.7e-25 1 CL0196 e 152 216 a   
Ribosomal_S5_C Domain Q9ST69_228-299 3.3e-25 1 CL0329 e 228 299 a   
Ribosomal_S6 Domain P82403_107-205 1.1e-17 1 No_clan f 107 205 a   
Ribosomal_S7 Domain P82129_2-149 1.5e-51 1 No_clan g 4 149 a   
Ribosomal_S8 Domain P09597_4-134 2.3e-42 1 No_clan h 4 134 a   
Ribosomal_S15 Domain Q9M3I4_21-82 5.4e-20 1 CL0600 o 21 82 a   
Ribosomal_S17 Domain P82137_63-130 1.4e-25 1 CL0021 q 63 130 a   
Ribosomal_S19 Domain P06508_6-83 2.7e-31 1 No_clan s 7 83 a   
Med12-LCEWAV Domain 0.00014 1 No_clan t 77 176 a
RRM_1 Domain P82277_186-256 1.3e-20 1 CL0221 v 124 194 a   
RRM_1 Domain P82277_86-156 2.1e-19 1 CL0221 v 24 94 a   
Ribosomal_S2 Family P08242_13-228 1.8e-77 1 CL0067 b 13 228 a   
Ribosomal_S4 Family P13788_3-88 7e-21 1 CL0492 d 3 88 a   
Ribosomal_S9 Family P82278_87-208 3.1e-40 1 CL0329 i 76 195 a   
Ribosomal_S10 Family P82162_100-194 4.4e-34 1 No_clan j 100 194 a   
Ribosomal_S11 Family P06506_28-137 2.2e-50 1 CL0267 k 28 137 a   
Ribosom_S12_S23 Family P62128_12-123 4.8e-42 1 CL0021 l 12 123 a   
Ribosomal_S13 Family 0.0000000000000016 1 CL0303 m 101 141 a
Ribosomal_S13 Family 0.000000000005 1 CL0303 m 48 104 a
Ribosomal_S14 Family P06507_46-99 2.3e-19 1 No_clan n 46 99 a   
Ribosomal_S16 Family P28807_8-64 7.6e-17 1 No_clan p 8 64 a   
Ribosomal_S18 Family Q9M3K7_24-75 7.6e-20 1 No_clan r 24 75 a   
Ribosomal_S20p Family P82130_76-165 3.5e-23 1 No_clan t 76 165 a   
Ribosomal_S21 Family P82024_95-138 9.3e-16 1 No_clan u 95 138 a   
PSRP-3_Ycf65 Family P82412_126-173 1.4e-26 1 No_clan w 126 173   
RPS31 Family P47910_55-94 1.2e-16 1 No_clan x 55 91 a   
Ribosomal_S30AE Family P19954_77-176 1.7e-22 1 No_clan y 77 176 a   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5x8r.pdb1.pdb:   [ download sequences in FASTA format ]
8 (protein): 
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b (protein): 
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c (protein): 
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d (protein): 
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e (protein): 
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f (protein): 
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g (protein): 
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h (protein): 
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i (protein): 
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j (protein): 
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k (protein): 
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l (protein): 
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m (protein): 
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n (protein): 
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o (protein): 
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p (protein): 
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q (protein): 
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r (protein): 
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s (protein): 
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t (protein): 
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u (protein): 
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v (protein): 
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w (protein): 
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x (protein): 
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y (protein): 
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a (rna): 
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