General information
PDB ID 5X8T
Title STRUCTURE OF THE 50S LARGE SUBUNIT OF CHLOROPLAST RIBOSOME FROM SPINACH
PDB header RIBOSOME
Date 2017-03-03
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.3
Kind rna
Organism SPINACIA OLERACEA
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5x8t.pdb 1234567CDEFGHKLMNOPQRSTUVXYZ0 BWA 0
Biounits:
5x8t.pdb1.pdb 1234567CDEFGHKLMNOPQRSTUVXYZ0 BWA 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L36 Domain P12230_1-37 1.5e-18 1 No_clan 5 1 37 A   
Ribosomal_L2_C Domain P06509_121-247 1e-53 1 CL0107 C 121 247 A   
Ribosomal_L2 Domain P06509_38-114 3.3e-31 1 CL0021 C 38 114 A   
Ribosomal_L5_C Domain P82192_137-230 6.9e-35 1 No_clan F 137 230 AB   
Ribosomal_L5 Domain P82192_77-133 7.4e-25 1 CL0652 F 77 133 AB   
Ribosomal_L6 Domain P82193_130-205 1.5e-20 1 No_clan G 130 205 A   
Ribosomal_L6 Domain P82193_50-122 0.000000000000023 1 No_clan G 50 122 A   
Ribosomal_L9_N Domain P82180_50-95 9.5e-17 1 No_clan H 50 95 A   
Ribosomal_L14 Domain P09596_1-121 1.2e-49 1 No_clan L 1 121 A   
Ribosomal_L22 Domain P09594_34-137 9.1e-29 1 No_clan T 34 137 A   
Ribosomal_L31 Family P82249_38-101 2.9e-16 1 No_clan 0 38 101   
Ribosomal_L33 Family P28805_9-59 1.9e-18 1 CL0167 2 9 59 A   
Ribosomal_L34 Family P82244_99-140 0.0000000000073 1 No_clan 3 96 137 A   
Ribosomal_L35p Family P23326_90-150 8.2e-22 1 No_clan 4 90 150 A   
DUF5323 Family P82411_48-93 8.5e-28 1 No_clan 7 48 93 A   
Ribosomal_L3 Family P82191_173-275 5.8e-16 1 CL0575 D 173 275 AW   
Ribosomal_L4 Family O49937_71-258 1.4e-51 1 No_clan E 71 258 A   
Ribosomal_L13 Family P12629_113-237 2.8e-50 1 No_clan K 113 237 A   
Ribosomal_L27A Family P22798_106-234 9.3e-31 1 CL0588 M 106 234 A   
Ribosomal_L16 Family P17353_4-132 5.7e-47 1 No_clan N 4 132 AB   
Ribosomal_L17 Family P82194_30-126 1.9e-35 1 No_clan O 30 126 AW   
Ribosomal_L18p Family P82195_47-166 1.5e-46 1 CL0267 P 47 166 AB   
Ribosomal_L19 Family P82413_126-232 1e-30 1 CL0107 Q 126 231 W   
Ribosomal_L20 Family P28803_3-111 1.5e-35 1 No_clan R 3 111 A   
Ribosomal_L21p Family P24613_123-224 1.1e-31 1 No_clan S 123 224 A   
Ribosomal_L23 Family Q9LWB5_113-191 0.000000000000021 1 No_clan U 113 191 A   
ribosomal_L24 Family P27683_105-169 1.4e-18 1 No_clan V 104 168 A   
KOW Family P27683_72-103 0.000000051 1 CL0107 V 71 102   
Ribosomal_L27 Family P82190_66-137 8.3e-33 1 No_clan X 66 137 A   
Ribosomal_L28 Family P82245_73-132 1.5e-22 1 No_clan Y 73 132 A   
Ribosomal_L29 Family P82248_66-122 0.0000000000000017 1 CL0346 Z 66 122 A   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5x8t.pdb1.pdb:   [ download sequences in FASTA format ]
0 (protein): 
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1 (protein): 
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2 (protein): 
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3 (protein): 
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4 (protein): 
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5 (protein): 
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6 (protein): 
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7 (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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A (rna): 
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B (rna): 
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W (rna): 
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