General information
PDB ID 5XOG
Title RNA POLYMERASE II ELONGATION COMPLEX BOUND WITH SPT5 KOW5 AND ELF1
PDB header TRANSCRIPTION
Date 2017-05-28
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind hybrid
Organism SYNTHETIC CONSTRUCT, KOMAGATAELLA PASTORIS, KOMAGATAELLA PHAFFII
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5xog.pdb ABCDEFGHIJKLMW TN P 0
Biounits:
5xog.pdb1.pdb ABCDEFGHIJKLMW TN P 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_Rpb1_1 Domain C4R4Y0_11-341 9.4e-115 1 No_clan A 11 341 NTP   
RNA_pol_Rpb1_5 Domain C4R4Y0_808-1400 2.7e-90 1 No_clan A 808 1400 NT   
RNA_pol_Rpb1_2 Domain C4R4Y0_343-508 2.4e-77 1 No_clan A 343 508 PT   
RNA_pol_Rpb1_6 Domain C4R4Y0_874-1058 4.4e-65 1 No_clan A 874 1058   
RNA_pol_Rpb1_3 Domain C4R4Y0_511-670 1.5e-46 1 No_clan A 511 670   
RNA_pol_Rpb1_7 Domain C4R4Y0_1143-1277 5e-36 1 No_clan A 1143 1277   
RNA_pol_Rpb1_4 Domain C4R4Y0_694-801 3.2e-34 1 No_clan A 694 801   
RNA_pol_Rpb2_6 Domain C4QZQ7_752-1124 3.3e-121 1 CL0410 B 752 1124 PT   
RNA_pol_Rpb2_2 Domain C4QZQ7_210-400 1.2e-49 1 No_clan B 210 400   
RNA_pol_Rpb2_7 Domain C4QZQ7_1126-1219 6.8e-34 1 No_clan B 1126 1219 T   
RNA_pol_Rpb2_4 Domain C4QZQ7_573-634 1e-23 1 No_clan B 573 634   
RNA_pol_Rpb2_3 Domain C4QZQ7_474-538 1.3e-23 1 No_clan B 474 538 N   
RNA_pol_Rpb2_5 Domain C4QZQ7_678-745 6e-21 1 No_clan B 678 745   
RNA_pol_A_bac Domain C4R7L2_48-171 2.9e-32 1 No_clan C 48 171   
RNA_pol_L Domain C4R7L2_18-255 4.5e-20 1 CL0509 C 18 255   
RNA_pol_Rpb5_C Domain C4R3P8_141-213 1.7e-32 1 No_clan E 141 213   
RNA_pol_Rpb5_N Domain C4R3P8_5-99 3.2e-28 1 CL0236 E 5 99 N   
SHS2_Rpb7-N Domain C4R9A1_8-79 9.1e-17 1 CL0319 G 8 79   
S1 Domain C4R9A1_80-164 0.00000000000049 1 CL0021 G 80 164   
TFIIS_C Domain F2QPE6_73-111 0.0000000000000021 1 CL0167 I 73 111   
RNA_POL_M_15KD Domain F2QPE6_4-41 0.000000000000095 1 CL0167 I 4 41   
RNA_pol_N Domain C4R009_1-59 1.3e-32 1 No_clan J 1 59   
RNA_pol_L_2 Domain C4R3Z5_30-104 9.2e-23 1 CL0509 K 30 104   
DNA_RNApol_7kD Domain F2QMI1_31-62 1.5e-16 1 CL0167 L 31 62   
Elf1 Domain A0A1B2JER8_15-78 1.9e-26 1 CL0167 M 15 78   
RNA_pol_Rpb2_1 Family C4QZQ7_29-448 2.4e-67 1 No_clan B 29 448 T   
RNA_pol_Rpb4 Family C4R2U9_50-182 2.3e-20 1 CL0426 D 50 182   
RNA_pol_Rpb6 Family C4R1V1_79-132 5.4e-17 1 No_clan F 79 132   
RNA_pol_Rpb8 Family C4R273_7-145 2.3e-42 1 CL0021 H 7 145   
KOW Family 0.0000031 1 CL0107 W 753 783
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5xog.pdb1.pdb:   [ download sequences in FASTA format ]
N (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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W (protein): 
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P (rna): 
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