General information
PDB ID 5XVO
Title E. FAE CAS1-CAS2/PRESPACER/TARGET TERNARY COMPLEX REVEALING DNA SAMPLING AND HALF-INTEGRATION STATES
PDB header IMMUNE SYSTEM
Date 2017-06-28
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.1
Kind dna
Organism ENTEROCOCCUS FAECALIS TX0027
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5xvo.pdb ABCDEFIJKLMN GHOPQR 0
Biounits:
5xvo.pdb1.pdb ABCDEF GHQR 1
5xvo.pdb2.pdb IJKLMN OP 1
5xvo.pdb3.pdb ABCDEFIJKLMN GHOPQR 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan A 5 237 GQ  L-Bb L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan A 5 237 GQ  L-Bb L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan A 5 237 GQ  L-Bb L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan A 5 237 GQ  L-Bb L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan B 5 237 GHQR  L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan B 5 237 GHQR  L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan B 5 237 GHQR  L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan B 5 237 GHQR  L-Mj 
Cas_Cas1 Family E6GPD7_5-237 6.9e-23 1 No_clan C 5 237 G   
Cas_Cas1 Family E6GPD7_5-237 6.9e-23 1 No_clan C 5 237 G   
Cas_Cas1 Family E6GPD7_5-237 6.9e-23 1 No_clan C 5 237 G   
Cas_Cas1 Family E6GPD7_5-237 6.9e-23 1 No_clan C 5 237 G   
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan D 5 237   
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan D 5 237   
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan D 5 237   
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan D 5 237   
CRISPR_Cas2 Family E6GPD6_6-85 1.4e-16 1 No_clan E 6 85 R  H-Bb H-Mj L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.4e-16 1 No_clan E 6 85 R  H-Bb H-Mj L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.4e-16 1 No_clan E 6 85 R  H-Bb H-Mj L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.4e-16 1 No_clan E 6 85 R  H-Bb H-Mj L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.4e-16 1 No_clan F 6 85 GQ  L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.4e-16 1 No_clan F 6 85 GQ  L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.4e-16 1 No_clan F 6 85 GQ  L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.4e-16 1 No_clan F 6 85 GQ  L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.5e-22 1 No_clan I 5 237 PO  L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.5e-22 1 No_clan I 5 237 PO  L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.5e-22 1 No_clan I 5 237 OP  L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.5e-22 1 No_clan I 5 237 OP  L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan J 5 237 O  H-Bb S-Bb L-Bb 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan J 5 237 O  H-Bb 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan J 5 237 O  H-Bb S-Bb L-Bb 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan J 5 237 O  H-Bb 
Cas_Cas1 Family E6GPD7_5-237 3.5e-22 1 No_clan K 5 237 OP  L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.5e-22 1 No_clan K 5 237 OP  L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.5e-22 1 No_clan K 5 237 OP  L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.5e-22 1 No_clan K 5 237 OP  L-Mj 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan L 5 237 P  H-Bb S-Bb L-Bb 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan L 5 237 P  H-Bb 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan L 5 237 P  H-Bb S-Bb L-Bb 
Cas_Cas1 Family E6GPD7_5-237 3.6e-25 1 No_clan L 5 237 P  H-Bb 
CRISPR_Cas2 Family E6GPD6_6-85 1.3e-16 1 No_clan M 6 85 OP  H-Bb H-Mj S-Bb L-Bb L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.3e-16 1 No_clan M 6 85 OP  H-Mj L-Bb L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.3e-16 1 No_clan M 6 85 P  H-Bb H-Mj S-Bb L-Bb L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.3e-16 1 No_clan M 6 85 P  H-Mj L-Bb L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.4e-16 1 No_clan N 6 85 OP  H-Bb H-Mj S-Bb L-Bb L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.4e-16 1 No_clan N 6 85 OP  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.4e-16 1 No_clan N 6 85 OQR  H-Bb H-Mj S-Bb L-Bb L-Mj 
CRISPR_Cas2 Family E6GPD6_6-85 1.4e-16 1 No_clan N 6 85 OQR  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5xvo.pdb1.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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Q (dna): 
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R (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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5xvo.pdb2.pdb:   [ download sequences in FASTA format ]
O (dna): 
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P (dna): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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5xvo.pdb3.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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O (dna): 
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P (dna): 
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Q (dna): 
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R (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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