General information
PDB ID 5XXU
Title SMALL SUBUNIT OF TOXOPLASMA GONDII RIBOSOME
PDB header RIBOSOME
Date 2017-07-05
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.35
Kind rna
Organism TOXOPLASMA GONDII
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5xxu.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefm 2 0
Biounits:
5xxu.pdb1.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefm 2 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S5 Domain B9PZF2_84-148 6.4e-31 1 CL0196 C 84 148 2   
Ribosomal_S5_C Domain B9PZF2_167-238 2.1e-23 1 CL0329 C 167 238 2   
Ribosomal_S3_C Domain A0A0F7UXI8_107-190 1.4e-23 1 No_clan D 107 190 2   
KH_2 Domain A0A0F7UXI8_22-98 4.2e-10 1 CL0007 D 22 98 2   
RS4NT Domain Q1JSZ0_3-39 1.1e-15 1 No_clan E 3 39 2   
S4 Domain Q1JSZ0_43-90 1.4e-05 1 CL0492 E 43 90 2   
Ribosomal_S7 Domain B9PPE8_39-192 5.5e-38 1 No_clan F 39 192 2   
Ribosomal_S27 Domain B9PQ37_102-147 7.6e-21 1 CL0167 f 102 147 2   
S4 Domain B9PQU8_107-153 4.4e-12 1 CL0492 J 107 153 2   
S10_plectin Domain B9PX63_11-100 9.4e-41 1 No_clan K 11 100 2   
Ribosomal_S17 Domain B9PMU7_75-144 3.4e-25 1 CL0021 L 75 144 2   
Ribosomal_L7Ae Domain B9Q056_26-121 3e-25 1 CL0101 M 26 140 2   
Ribosomal_S13_N Domain A0A125YSG6_2-60 2.2e-26 1 No_clan N 2 60 2   
Ribosomal_S15 Domain A0A125YSG6_71-148 1e-14 1 CL0600 N 70 149 2   
Ribosomal_S19 Domain B9PSN8_48-133 8.3e-32 1 No_clan P 48 133 2   
Ribosomal_S8 Domain A0A125YJX3_106-231 3.5e-20 1 No_clan W 5 130 2   
Ribosomal_S26e Family B9PP49_2-100 2.6e-48 1 No_clan a 2 100 2   
Ribosomal_S2 Family Q8MPF7_112-185 1.4e-14 1 CL0067 A 112 185 2   
Ribosomal_S2 Family Q8MPF7_19-119 2e-14 1 CL0067 A 19 119 2   
Ribosomal_S3Ae Family B9PGG2_22-221 1e-94 1 No_clan B 22 221 2   
Ribosomal_S27e Family A0A125YVX8_95-149 3.8e-26 1 CL0167 b 26 80 2   
Ribosomal_S28e Family A0A125YJ29_53-117 5.8e-28 1 CL0021 c 3 67 2   
Ribosomal_S14 Family A0A0F7UYM7_4-54 1.7e-13 1 No_clan d 4 54 2   
Ribosomal_S4e Family Q1JSZ0_95-169 3.5e-32 1 No_clan E 95 169 2   
Ribosomal_S30 Family B9PTA0_3-57 6e-25 1 No_clan e 3 58 2   
40S_S4_C Family Q1JSZ0_212-259 4.7e-23 1 No_clan E 212 259 2   
KOW Family Q1JSZ0_177-211 3.1e-05 1 CL0107 E 177 211 2   
Ribosomal_S6e Family B9PVR5_1-126 1.7e-51 1 No_clan G 1 126 2   
Ribosomal_S7e Family B9PNL1_16-193 3.8e-64 1 CL0652 H 16 193 2   
Ribosomal_S8e Family B6KGK3_2-187 5.2e-56 1 No_clan I 2 187 2   
Ribosomal_S4 Family B9PQU8_3-106 1.7e-06 1 CL0492 J 4 106 2   
Ribosomal_S17_N Family B9PMU7_7-73 2.6e-24 1 No_clan L 7 73 2   
Ribosomal_L41 Family F0JB24_15-39 8.1e-08 1 CL0652 m 15 39 2   
Ribosomal_S11 Family A0A125YXW4_34-152 4.3e-48 1 CL0267 O 34 152 2   
Ribosomal_S9 Family B6KC70_79-211 1.1e-32 1 CL0329 Q 16 148 2   
Ribosomal_S17e Family B9PXH2_2-118 1.9e-56 1 No_clan R 2 118 2   
Ribosomal_S13 Family B9PMB3_16-144 4.3e-52 1 CL0303 S 16 144 2   
Ribosomal_S19e Family A0A125YMR9_171-307 8.3e-57 1 CL0123 T 18 154 2   
Ribosomal_S10 Family B6KQG9_135-229 8.4e-29 1 No_clan U 135 229 2   
Ribosomal_S21e Family A0A125YS47_1-79 9.5e-38 1 No_clan V 1 79 2   
Ribosom_S12_S23 Family B9PHL8_29-137 1.1e-44 1 CL0021 X 29 137 2   
Ribosomal_S24e Family A0A125YKH1_158-237 1.7e-28 1 No_clan Y 26 105 2   
Ribosomal_S25 Family S7V273_90-158 4.9e-27 1 CL0123 Z 90 158 2   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5xxu.pdb1.pdb:   [ download sequences in FASTA format ]
a (protein): 
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b (protein): 
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c (protein): 
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d (protein): 
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e (protein): 
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f (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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2 (rna): 
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