General information
PDB ID 5XYI
Title SMALL SUBUNIT OF TRICHOMONAS VAGINALIS RIBOSOME
PDB header RIBOSOME
Date 2017-07-08
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.35
Kind rna
Organism TRICHOMONAS VAGINALIS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5xyi.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZabcdegn 2 0
Biounits:
5xyi.pdb1.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZabcdegn 2 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S5 Domain A2EHK3_91-155 5.4e-25 1 CL0196 C 91 155 2   
Ribosomal_S5_C Domain A2EHK3_174-245 1e-20 1 CL0329 C 174 245 2   
Ribosomal_S3_C Domain A2DIM3_106-189 3e-19 1 No_clan D 106 189 2   
KH_2 Domain A2DIM3_21-97 1.1e-05 1 CL0007 D 21 97 2   
RS4NT Domain A2FC75_3-39 9.1e-16 1 No_clan E 3 39 2   
S4 Domain 1.7e-07 1 CL0492 E 42 90 2
Ribosomal_S7 Domain A2E4S6_41-193 2.2e-29 1 No_clan F 41 193 2   
S4 Domain A2DNY3_105-149 1.3e-06 1 CL0492 J 105 149 2   
S10_plectin Domain A2EBA2_3-91 2.1e-23 1 No_clan K 3 91 2   
Ribosomal_S17 Domain A2DHU8_71-139 6.6e-27 1 CL0021 L 71 139 2   
Ribosomal_L7Ae Domain A2FA40_3-99 1.9e-17 1 CL0101 M 3 111 2   
Ribosomal_S13_N Domain A2D9L2_2-60 6.7e-25 1 No_clan N 2 60 2   
Ribosomal_S15 Domain A2D9L2_71-149 1.6e-12 1 CL0600 N 70 149 2   
Ribosomal_S19 Domain A2DVD8_40-127 1.1e-26 1 No_clan P 40 127 2   
Ribosomal_S8 Domain A2DLW4_5-130 9e-22 1 No_clan W 5 130 2   
Ribosomal_S26e Family A2DST7_2-102 9.4e-42 1 No_clan a 2 101 2   
Ribosomal_S2 Family A2EFE7_110-182 1.7e-15 1 CL0067 A 110 182 2   
Ribosomal_S2 Family A2EFE7_16-113 5e-12 1 CL0067 A 16 115 2   
Ribosomal_S3Ae Family A2G9Z8_19-217 8.3e-55 1 No_clan B 19 217 2   
Ribosomal_S27e Family A2FBZ2_29-82 2.9e-15 1 CL0167 b 29 82 2   
Ribosomal_S28e Family A2DQN8_7-67 7.3e-31 1 CL0021 c 7 67 2   
Ribosomal_S14 Family A2DYA8_6-56 3.1e-14 1 No_clan d 6 56 2   
Ribosomal_S4e Family A2FC75_95-169 7.8e-26 1 No_clan E 95 169 2   
Ribosomal_S30 Family A2FHY5_8-49 4.5e-17 1 No_clan e 8 49 2   
40S_S4_C Family A2FC75_212-248 1.2e-12 1 No_clan E 212 248   
KOW Family 0.00011 0 CL0107 E 177 211 2
Ribosomal_S7e Family A2G5X6_2-165 2.6e-39 1 CL0652 H 2 165 2   
Ribosomal_S8e Family A2E1L5_2-181 2.8e-47 1 No_clan I 2 181 2   
Ribosomal_S4 Family A2DNY3_5-93 1.8e-06 1 CL0492 J 6 91 2   
Ribosomal_S17_N Family A2DHU8_5-69 4.2e-23 1 No_clan L 5 69 2   
Ribosomal_L41 Family P0CX86_1-25 2.1e-09 1 CL0652 n 2 25 2   
Ribosomal_S11 Family Q76KS8_37-155 2.3e-42 1 CL0267 O 37 155 2   
Ribosomal_S9 Family A2D919_8-140 1.7e-32 1 CL0329 Q 8 140 2   
Ribosomal_S17e Family A2DPS3_3-120 1.3e-52 1 No_clan R 3 119 2   
Ribosomal_S13 Family A2DTR8_16-143 2.6e-35 1 CL0303 S 16 143 2   
Ribosomal_S19e Family A2EG54_12-147 1.3e-45 1 CL0123 T 12 147 2   
Ribosomal_S10 Family A2FDE0_25-119 5.8e-17 1 No_clan U 25 120 2   
Ribosomal_S21e Family A2FFS8_1-79 5.3e-33 1 No_clan V 1 79   
Ribosom_S12_S23 Family A2D895_30-142 2.6e-40 1 CL0021 X 30 142 2   
Ribosomal_S24e Family A2F0H5_23-95 1.2e-27 1 No_clan Y 23 108 2   
Ribosomal_S25 Family A2ER97_18-87 5.2e-11 1 CL0123 Z 18 87 2   
WD40 Repeat A2ELV7_200-237 1.7e-07 1 CL0186 g 200 237   
WD40 Repeat A2ELV7_200-237 6.5e-06 1 CL0186 g 70 108 2   
WD40 Repeat A2ELV7_200-237 6.6e-05 1 CL0186 g 112 150   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5xyi.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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e (protein): 
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F (protein): 
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g (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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2 (rna): 
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