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Composition of PDB entry and biounits
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File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
PDB entry: | |||||
pdb5xym.pdb | 01234CDEFGHJKLMNOPQRSTUVWXYZa | AB | 0 |
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Biounits: | |||||
5xym.pdb1.pdb | 01234CDEFGHJKLMNOPQRSTUVWXYZa | AB | 1 |
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Pfam domains
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Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Domain | A0QSL4_1-37 | 2e-18 | 1 | No_clan | 4 | 1 | 37 | A |
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Domain | A0QSD4_126-251 | 5e-55 | 1 |
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C | 126 | 251 | A |
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Domain | A0QSD4_42-119 | 7.2e-34 | 1 |
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C | 42 | 119 | A |
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Domain | A0QSG1_91-184 | 8.6e-35 | 1 | No_clan | F | 91 | 184 | AB |
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Domain | A0QSG1_31-87 | 9.5e-26 | 1 |
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F | 31 | 87 | AB |
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Domain | A0QSG4_91-166 | 4.9e-21 | 1 | No_clan | G | 91 | 166 | A |
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Domain | A0QSG4_11-83 | 0.00033 | 0 | No_clan | G | 13 | 83 | A |
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Domain | A0R7F6_1-39 | 2.9e-13 | 1 | No_clan | H | 1 | 39 | A |
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Domain | A0QSF9_1-122 | 3.2e-55 | 1 | No_clan | K | 1 | 122 | A |
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Domain | A0QSD6_12-115 | 8.2e-37 | 1 | No_clan | S | 12 | 115 | A |
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Domain | A0R3D2_11-97 | 1.8e-24 | 1 | No_clan | V | 11 | 97 | B |
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Domain | A0R3D2_105-185 | 7.3e-13 | 1 | No_clan | V | 97 | 183 |
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Domain | A0QSG7_4-54 | 1.3e-18 | 1 | No_clan | Z | 4 | 54 | A |
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Family | A0R3I9_2-50 | 3.2e-14 | 1 |
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0 | 2 | 50 | A |
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Family | A0R551_8-52 | 1.2e-11 | 1 |
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1 | 8 | 52 | A |
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Family | A0R7K0_4-47 | 6e-19 | 1 | No_clan | 2 | 4 | 47 | A |
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Family | A0QYU7_2-62 | 1.1e-24 | 1 | No_clan | 3 | 2 | 62 | A |
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Family | A0QSD1_80-191 | 2e-18 | 1 |
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D | 79 | 191 | A |
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Family | A0QSD2_18-206 | 1.3e-65 | 1 | No_clan | E | 18 | 206 | A |
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Family | A0QSP8_13-131 | 1.9e-54 | 1 | No_clan | J | 14 | 138 | A |
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Family | A0QSG8_29-146 | 8.6e-32 | 1 |
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L | 29 | 146 | A |
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Family | A0QSD8_4-132 | 4.7e-44 | 1 | No_clan | M | 4 | 132 | A |
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Family | A0QSL9_20-116 | 5.3e-38 | 1 | No_clan | N | 20 | 116 | A |
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Family | A0QSG5_12-127 | 2.4e-34 | 1 |
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O | 12 | 127 | A |
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Family | A0QV42_2-112 | 8.1e-51 | 1 |
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P | 2 | 112 | A |
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Family | A0QYU6_3-109 | 1.3e-41 | 1 | No_clan | Q | 3 | 109 | A |
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Family | A0R151_3-102 | 7.5e-34 | 1 | No_clan | R | 3 | 102 | A |
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Family | A0QSD3_9-95 | 5e-31 | 1 | No_clan | T | 9 | 95 | A |
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Family | A0QSG0_38-105 | 2.2e-15 | 1 | No_clan | U | 36 | 105 | A |
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Family | A0QSG0_5-36 | 1.8e-08 | 1 |
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U | 5 | 36 | A |
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Family | A0R150_8-80 | 2.9e-33 | 1 | No_clan | W | 8 | 80 | AB |
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Family | A0QV03_3-61 | 1.6e-22 | 1 | No_clan | X | 3 | 61 | A |
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Family | A0QSD9_8-64 | 2.7e-25 | 1 |
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Y | 8 | 64 | A |
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SCOP domains
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No SCOP domains | |||||||
GO terms | ||
Protein chains: | GO type: | GO description: |
0=1-57 | C | large ribosomal subunit |
0=1-57 | F | structural constituent of ribosome |
0=1-57 | P | translation |
1=1-54 | C | ribosome |
1=1-54 | F | structural constituent of ribosome |
1=1-54 | P | translation |
2=1-47 | C | ribosome |
2=1-47 | F | structural constituent of ribosome |
2=1-47 | P | translation |
3=1-64 | C | ribosome |
3=1-64 | F | structural constituent of ribosome |
3=1-64 | P | translation |
4=1-37 | C | ribosome |
4=1-37 | F | structural constituent of ribosome |
4=1-37 | P | translation |
C=1-278 | C | large ribosomal subunit |
C=1-278 | F | rRNA binding |
C=1-278 | F | structural constituent of ribosome |
C=1-278 | F | transferase activity |
C=1-278 | P | translation |
D=1-217 | C | ribosome |
D=1-217 | F | rRNA binding |
D=1-217 | F | structural constituent of ribosome |
D=1-217 | P | translation |
E=1-215 | C | ribosome |
E=1-215 | F | rRNA binding |
E=1-215 | F | structural constituent of ribosome |
E=1-215 | P | translation |
F=1-187 | C | ribosome |
F=1-187 | F | rRNA binding |
F=1-187 | F | structural constituent of ribosome |
F=1-187 | F | tRNA binding |
F=1-187 | P | translation |
G=1-179 | C | ribosome |
G=1-179 | F | rRNA binding |
G=1-179 | F | structural constituent of ribosome |
G=1-179 | P | translation |
H=1-151 | C | ribosome |
H=1-151 | F | rRNA binding |
H=1-151 | F | structural constituent of ribosome |
H=1-151 | P | translation |
J=1-147 | C | ribosome |
J=1-147 | F | structural constituent of ribosome |
J=1-147 | P | translation |
K=1-122 | C | large ribosomal subunit |
K=1-122 | F | rRNA binding |
K=1-122 | F | structural constituent of ribosome |
K=1-122 | P | translation |
M=1-138 | C | ribosome |
M=1-138 | F | rRNA binding |
M=1-138 | F | structural constituent of ribosome |
M=1-138 | F | tRNA binding |
M=1-138 | P | translation |
N=1-199 | C | ribosome |
N=1-199 | F | structural constituent of ribosome |
N=1-199 | P | translation |
P=1-113 | C | ribosome |
P=1-113 | F | structural constituent of ribosome |
P=1-113 | P | translation |
Q=1-129 | C | ribosome |
Q=1-129 | F | rRNA binding |
Q=1-129 | F | structural constituent of ribosome |
Q=1-129 | P | ribosomal large subunit assembly |
Q=1-129 | P | translation |
R=1-103 | C | ribosome |
R=1-103 | F | rRNA binding |
R=1-103 | F | structural constituent of ribosome |
R=1-103 | P | translation |
S=1-153 | C | large ribosomal subunit |
S=1-153 | F | rRNA binding |
S=1-153 | F | structural constituent of ribosome |
S=1-153 | P | translation |
T=1-100 | C | ribosome |
T=1-100 | F | rRNA binding |
T=1-100 | F | structural constituent of ribosome |
T=1-100 | P | translation |
U=1-105 | C | ribosome |
U=1-105 | F | rRNA binding |
U=1-105 | F | structural constituent of ribosome |
U=1-105 | P | translation |
W=1-88 | C | ribosome |
W=1-88 | F | structural constituent of ribosome |
W=1-88 | P | translation |
Y=1-77 | C | ribosome |
Y=1-77 | F | structural constituent of ribosome |
Y=1-77 | P | translation |
Z=1-61 | C | large ribosomal subunit |
Z=1-61 | F | structural constituent of ribosome |
Z=1-61 | P | translation |
Sequences
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5xym.pdb1.pdb:
[
download sequences in FASTA format
]
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0 (protein):
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1 (protein):
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2 (protein):
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3 (protein):
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4 (protein):
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C (protein):
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D (protein):
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E (protein):
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F (protein):
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G (protein):
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H (protein):
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J (protein):
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K (protein):
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L (protein):
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M (protein):
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N (protein):
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O (protein):
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P (protein):
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Q (protein):
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R (protein):
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S (protein):
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T (protein):
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U (protein):
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V (protein):
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W (protein):
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X (protein):
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Y (protein):
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Z (protein):
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A (rna):
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B (rna):
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