General information
PDB ID 5XYU
Title SMALL SUBUNIT OF MYCOBACTERIUM SMEGMATIS RIBOSOME
PDB header RIBOSOME
Date 2017-07-10
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.45
Kind rna
Organism
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5xyu.pdb CDEFGHIJKLMNOPQRSTU A 0
Biounits:
5xyu.pdb1.pdb CDEFGHIJKLMNOPQRSTU A 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S3_C Domain A0QSD7_119-202 8e-36 1 No_clan C 119 202 A   
KH_2 Domain A0QSD7_37-110 0.0000002 1 CL0007 C 28 110   
S4 Domain A0QSL7_91-138 1.6e-19 1 CL0492 D 91 138 A   
Ribosomal_S5_C Domain A0QSG6_111-182 3.1e-28 1 CL0329 E 111 182 A   
Ribosomal_S5 Domain A0QSG6_36-100 5.7e-28 1 CL0196 E 36 100 A   
Ribosomal_S6 Domain A0R7F9_1-85 1.8e-18 1 No_clan F 1 85 A   
Ribosomal_S7 Domain A0QS97_2-149 3.5e-50 1 No_clan G 2 149 A   
Ribosomal_S8 Domain A0QSG3_5-132 2.7e-48 1 No_clan H 5 132 A   
Ribosomal_S15 Domain A0QVQ3_8-88 5.7e-36 1 CL0600 O 8 87 A   
Ribosomal_S17 Domain A0QSE0_25-92 5.8e-30 1 CL0021 Q 25 92 A   
Ribosomal_S19 Domain A0QSD5_3-83 1.8e-35 1 No_clan S 4 82 A   
DUF1713 Domain A0QR10_2-26 0.000000021 1 No_clan U 2 26 A   
Ribosomal_S4 Family A0QSL7_3-90 1.4e-16 1 CL0492 D 3 90 A   
Ribosomal_S9 Family A0QSP9_30-150 5e-40 1 CL0329 I 30 148 A   
Ribosomal_S10 Family A0QSD0_7-101 3.4e-31 1 No_clan J 7 101 A   
Ribosomal_S11 Family A0QSL6_28-137 2.7e-49 1 CL0267 K 28 137 A   
Ribosom_S12_S23 Family A0QS96_12-123 2.3e-42 1 CL0021 L 12 123 A   
Ribosomal_S13 Family A0QSL5_3-109 4.2e-35 1 CL0303 M 3 109 A   
Ribosomal_S14 Family A0QSG2_9-60 1.4e-25 1 No_clan N 9 60 A   
Ribosomal_S16 Family A0QV37_9-67 9.6e-21 1 No_clan P 9 67 A   
Ribosomal_S18 Family A0R7F7_26-77 2.2e-23 1 No_clan R 27 77 A   
Ribosomal_S20p Family A0R102_2-84 3.8e-29 1 No_clan T 3 84 A   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5xyu.pdb1.pdb:   [ download sequences in FASTA format ]
C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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A (rna): 
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