General information
PDB ID 5YBB
Title STRUCTURAL BASIS UNDERLYING COMPLEX ASSEMBLY ANDCONFORMATIONAL TRANSITION OF THE TYPE I R-M SYSTEM
PDB header DNA BINDING PROTEIN/DNA
Date 2017-09-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.2
Kind dna
Organism SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5ybb.pdb ACDBEG HI 0
Biounits:
5ybb.pdb1.pdb ACDBEG HI 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HsdM_N Domain Q8R9Q4_10-136 1.7e-19 1 No_clan A 10 136   
HsdM_N Domain Q8R9Q4_10-136 1.7e-19 1 No_clan B 10 136   
Methylase_S Domain Q8R9Q6_211-381 9.3e-19 1 CL0477 D 211 381   
Methylase_S Domain Q8R9Q6_9-187 0.0000000013 1 CL0477 D 9 187 HI  H-Bb L-Bb L-Mj 
Methylase_S Domain Q8R9Q6_211-381 9.3e-19 1 CL0477 G 211 381   
Methylase_S Domain Q8R9Q6_9-187 0.0000000013 1 CL0477 G 9 187 HI  H-Bb S-Mj L-Bb L-Mj 
N6_Mtase Family Q8R9Q4_143-462 1.4e-61 1 CL0063 A 143 462   
N6_Mtase Family Q8R9Q4_143-462 1.4e-61 1 CL0063 B 143 462   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
5ybb.pdb1.pdb:   [ download sequences in FASTA format ]
H (dna): 
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I (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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G (protein): 
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