General information
PDB ID 5YEL
Title CRYSTAL STRUCTURE OF CTCF ZFS6-11-GB7CSE
PDB header DNA BINDING PROTEIN/DNA
Date 2017-09-18
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.96
Kind dna
Organism SYNTHETIC CONSTRUCT, HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5yel.pdb AB DCFE 0
Biounits:
5yel.pdb1.pdb B DC 1
5yel.pdb2.pdb A FE 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-H2C2_2 Domain P49711_482-507 5.4e-06 0 CL0361 A 481 506 EF  L-Bb 
zf-H2C2_2 Domain P49711_504-530 0.00012 0 CL0361 A 507 534 EF  H-Bb H-Mj L-Mj 
LIM Domain P49711_521-570 0.00024 0 CL0167 A 525 576 EF  H-Bb H-Mj L-Bb L-Mj 
zf-C2H2 Domain P49711_555-575 0.00076 1 CL0361 A 555 576 EF  H-Bb L-Bb L-Mj 
zf-H2C2_2 Domain P49711_482-507 5.5e-06 0 CL0361 B 481 506 CD  L-Bb 
zf-H2C2_2 Domain P49711_504-530 0.00012 0 CL0361 B 507 534 CD  H-Bb H-Mj L-Bb L-Mj 
zf-C2H2 Domain P49711_555-575 0.00077 1 CL0361 B 555 576 CD  H-Bb L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=405-580 C chromosome, centromeric region
A/B=405-580 C condensed chromosome
A/B=405-580 C nucleolus
A/B=405-580 C nucleoplasm
A/B=405-580 C nucleus
A/B=405-580 F chromatin insulator sequence binding
A/B=405-580 F DNA-binding transcription factor activity
A/B=405-580 F DNA-binding transcription repressor activity, RNA polymerase II-specific
A/B=405-580 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=405-580 F sequence-specific DNA binding
A/B=405-580 F transcription regulatory region sequence-specific DNA binding
A/B=405-580 F zinc ion binding
A/B=405-580 P chromosome segregation
A/B=405-580 P DNA methylation
A/B=405-580 P maintenance of DNA methylation
A/B=405-580 P negative regulation of cell population proliferation
A/B=405-580 P negative regulation of transcription by RNA polymerase II
A/B=405-580 P negative regulation of transcription, DNA-templated
A/B=405-580 P nucleosome positioning
A/B=405-580 P positive regulation of gene expression
A/B=405-580 P positive regulation of transcription by RNA polymerase II
A/B=405-580 P positive regulation of transcription, DNA-templated
A/B=405-580 P protein localization to chromosome, centromeric region
A/B=405-580 P regulation of centromeric sister chromatid cohesion
A/B=405-580 P regulation of gene expression by genetic imprinting
A/B=405-580 P regulation of gene expression, epigenetic
A/B=405-580 P regulation of histone acetylation
A/B=405-580 P regulation of histone methylation
A/B=405-580 P regulation of molecular function, epigenetic
Sequences
Download file with secondary structure created by Stride  
5yel.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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B (protein): 
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5yel.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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