General information
PDB ID 5YUV
Title DNA POLYMERASE IV - DNA TERNARY COMPLEX 5
PDB header DNA BINDING PROTEIN/DNA
Date 2017-11-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.06
Kind dna
Organism ESCHERICHIA COLI K-12
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CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb5yuv.pdb FA GHBC 0
Biounits:
5yuv.pdb1.pdb F GH 1
5yuv.pdb2.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
IMS_C Domain Q47155_240-341 1.6e-07 1 No_clan A 240 341 BC  H-Bb S-Bb S-Mj L-Bb 
IMS_C Domain Q47155_240-341 1.6e-07 1 No_clan F 240 341 GH  H-Bb S-Bb S-Mj L-Bb 
IMS Family Q47155_7-154 5e-49 1 No_clan A 7 154 BC  H-Bb S-Bb L-Bb 
IMS Family Q47155_7-154 5e-49 1 No_clan F 7 154 HG  H-Bb S-Bb 
IMS_HHH Motif Q47155_166-197 5.8e-08 1 CL0198 A 166 197 C  H-Bb L-Bb 
IMS_HHH Motif Q47155_166-197 5.8e-08 1 CL0198 F 166 197 H  H-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/F=2-351 C cytoplasm
A/F=2-351 F damaged DNA binding
A/F=2-351 F DNA-directed DNA polymerase activity
A/F=2-351 F magnesium ion binding
A/F=2-351 P cellular response to DNA damage stimulus
A/F=2-351 P DNA synthesis involved in DNA repair
A/F=2-351 P DNA-dependent DNA replication
A/F=2-351 P error-prone translesion synthesis
A/F=2-351 P SOS response
A/F=2-351 P translesion synthesis
Sequences
Download file with secondary structure created by Stride  
5yuv.pdb1.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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F (protein): 
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5yuv.pdb2.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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