General information
PDB ID 6AZ1
Title CRYO-EM STRUCTURE OF THE SMALL SUBUNIT OF LEISHMANIA RIBOSOME BOUND TO PAROMOMYCIN
PDB header RIBOSOME/ANTIBIOTIC
Date 2017-09-09
Experimental method ELECTRON MICROSCOPY
Resolution (A) 2.7
Kind rna
Organism LEISHMANIA DONOVANI, ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6az1.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefg 12345 0
Biounits:
6az1.pdb1.pdb ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefg 12345 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S3_C Domain E9BQ25_227-310 1.1e-19 1 No_clan C 104 187 15   
KH_2 Domain E9BQ25_142-218 2.3e-07 1 CL0007 C 19 95 1   
S4 Domain E9BTJ0_106-152 5.1e-13 1 CL0492 D 106 152 1   
RS4NT Domain E9BBI6_2-36 1.2e-17 1 No_clan E 2 36 1   
S4 Domain E9BBI6_39-87 1.3e-06 1 CL0492 E 39 87 1   
Ribosomal_S5_C Domain E9BNF0_170-241 8.1e-26 1 CL0329 F 171 242 1   
Ribosomal_S5 Domain E9BNF0_87-151 9.4e-22 1 CL0196 F 88 152 1   
Ribosomal_S27 Domain E9BTC5_97-146 4.6e-17 1 CL0167 f 97 144 1   
Ribosomal_S7 Domain A4HV05_38-190 4.8e-29 1 No_clan H 38 190 14   
Ribosomal_S8 Domain E9BAV6_5-130 6e-21 1 No_clan J 5 130 1   
S10_plectin Domain E9BTG4_36-122 8e-32 1 No_clan N 36 122 1   
Ribosomal_L7Ae Domain E9BBC0_28-123 1.2e-22 1 CL0101 Q 28 123 1   
Ribosomal_S13_N Domain E9BPR7_2-60 4.4e-24 1 No_clan T 2 60 1   
Ribosomal_S15 Domain E9BPR7_70-143 1.3e-12 1 CL0600 T 70 143 1   
Ribosomal_S17 Domain Q9TXA6_56-124 5.9e-23 1 CL0021 U 88 156 1   
Ribosomal_S19 Domain E9BFQ0_1-84 2.2e-30 1 No_clan W 50 135 1   
Ribosomal_S3Ae Family E9BRS2_23-224 1.4e-68 1 No_clan A 22 223 1   
Ribosomal_S25 Family E9BHM6_35-104 1.1e-26 1 CL0123 a 35 104 1   
Ribosomal_S26e Family E9BK95_2-104 7.4e-34 1 No_clan b 2 104 15   
Ribosomal_S2 Family A4IDS4_114-187 9.4e-17 1 CL0067 B 114 187 1   
Ribosomal_S27e Family E9BUA2_29-83 8.6e-22 1 CL0167 c 29 83 1   
Ribosomal_S28e Family E9BIH3_22-86 3e-29 1 CL0021 d 21 85 14   
Ribosomal_S4 Family E9BTJ0_5-129 2.3e-07 1 CL0492 D 5 105 14   
Ribosomal_S4e Family E9BBI6_92-166 3.7e-24 1 No_clan E 92 166 1   
Ribosomal_S30 Family E9BLG3_3-60 5.2e-24 1 No_clan e 3 64 1   
40S_S4_C Family E9BBI6_209-257 3.7e-16 1 No_clan E 209 257 1   
KOW Family 9.9e-05 0 CL0107 E 174 208 1
Ribosomal_S6e Family O44012_1-129 2.7e-38 1 No_clan G 1 129 1   
Ribosomal_S7e Family E9B7A8_7-190 1.6e-63 1 CL0652 I 7 190 1   
Ribosomal_S8e Family E9BH78_2-203 2e-48 1 No_clan K 2 203 1   
Ribosomal_S9 Family E9BI96_16-149 2.9e-27 1 CL0329 L 16 149 13   
Ribosomal_S10 Family E9BJI2_18-112 4.8e-24 1 No_clan M 18 112 1   
Ribosomal_S11 Family E9BMA8_22-140 3.3e-47 1 CL0267 O 22 140 1   
Ribosom_S12_S23 Family E9BFB6_29-142 2.9e-48 1 CL0021 P 29 142 15   
Ribosomal_S13 Family E9BTF9_28-156 9.5e-45 1 CL0303 R 15 143 1   
Ribosomal_S14 Family E9BJV7_6-57 2.2e-11 1 No_clan S 6 57 1   
Ribosomal_S17_N Family Q9TXA6_1-54 4.4e-28 1 No_clan U 18 86 1   
Ribosomal_S17e Family E9BJZ5_2-123 2.8e-48 1 No_clan V 2 122 1   
Ribosomal_S19e Family E9BR60_37-173 7.1e-43 1 CL0123 X 37 173 1   
Ribosomal_S21e Family E9BAR6_127-202 7.7e-34 1 No_clan Y 6 84 1   
Ribosomal_S24e Family E9BU11_29-108 5.8e-27 1 No_clan Z 29 108 1   
WD40 Repeat Q9BIJ5_184-222 6.8e-08 1 CL0186 g 184 222 1   
WD40 Repeat Q9BIJ5_97-135 3.7e-07 1 CL0186 g 97 135 1   
WD40 Repeat Q9BIJ5_138-180 7.7e-06 1 CL0186 g 138 180 1   
WD40 Repeat Q9BIJ5_55-93 1.2e-05 1 CL0186 g 55 93 1   
WD40 Repeat Q9BIJ5_270-307 0.00044 1 CL0186 g 270 307   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6az1.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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e (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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1 (rna): 
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2 (rna): 
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3 (rna): 
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4 (rna): 
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5 (rna): 
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