General information
PDB ID 6FAI
Title STRUCTURE OF A EUKARYOTIC CYTOPLASMIC PRE-40S RIBOSOMAL SUBUNIT
PDB header RIBOSOME
Date 2017-12-15
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.4
Kind rna
Organism
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6fai.pdb bcdeghijklABCDEFGHIJLMNOPQRSTUVWXYZ 2 0
Biounits:
6fai.pdb1.pdb bcdeghijklABCDEFGHIJLMNOPQRSTUVWXYZ 2 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S5 Domain P25443_76-140 1.1e-26 1 CL0196 C 76 140 2   
Ribosomal_S5_C Domain P25443_159-230 4.8e-24 1 CL0329 C 159 230 2   
Ribosomal_S3_C Domain P05750_105-188 1e-22 1 No_clan D 105 188   
KH_2 Domain P05750_20-96 1.8e-11 1 CL0007 D 20 96 2   
RS4NT Domain P0CX35_3-39 1.5e-19 1 No_clan E 3 39 2   
S4 Domain P0CX35_42-90 1.6e-08 1 CL0492 E 42 90 2   
Ribosomal_S7 Domain P26783_76-225 4.4e-37 1 No_clan F 72 225 2   
S4 Domain O13516_107-153 3.3e-12 1 CL0492 J 107 153 2   
AARP2CN Domain Q07381_234-309 1.4e-21 1 No_clan k 234 335 2   
Rio2_N Domain P40160_8-91 2.9e-32 1 CL0123 l 8 91 2   
Ribosomal_S17 Domain P0CX47_73-141 6.6e-28 1 CL0021 L 73 141 2   
Ribosomal_L7Ae Domain P48589_26-123 1.2e-22 1 CL0101 M 26 123 2   
Ribosomal_S13_N Domain P05756_2-60 8.1e-28 1 No_clan N 2 60 2   
Ribosomal_S15 Domain P05756_70-148 3.2e-15 1 CL0600 N 70 149 2   
Ribosomal_S19 Domain Q01855_43-128 2e-32 1 No_clan P 43 128 2   
Ribosomal_S8 Domain P0C0W1_5-130 5e-24 1 No_clan W 5 130 2   
Ribosomal_S2 Family P32905_111-183 2.9e-14 1 CL0067 A 111 183 2   
Ribosomal_S2 Family P32905_17-116 9.4e-10 1 CL0067 A 17 116 2   
Ribosomal_S3Ae Family P33442_20-221 7.6e-88 1 No_clan B 20 221 2   
Ribosomal_S27e Family P35997_28-82 5e-30 1 CL0167 b 28 82 2   
Ribosomal_S28e Family Q3E7X9_5-66 1.2e-32 1 CL0021 c 5 66 2   
Ribosomal_S14 Family P41057_20-56 5.4e-12 1 No_clan d 20 56 2   
Ribosomal_S4e Family P0CX35_95-169 2.1e-38 1 No_clan E 95 169 2   
40S_S4_C Family P0CX35_212-259 3.8e-26 1 No_clan E 212 259 2   
Ribosomal_S30 Family P0CX33_7-61 3.3e-11 1 No_clan e 11 61 2   
KOW Family P0CX35_177-211 3.8e-06 1 CL0107 E 177 211 2   
Ribosomal_S6e Family P0CX37_1-126 6.4e-58 1 No_clan G 1 126 2   
Ribosomal_S7e Family P26786_5-187 6.2e-80 1 CL0652 H 5 187 2   
Bystin Family P38333_205-465 8.4e-117 1 No_clan i 205 466 2   
Ribosomal_S8e Family P0CX39_2-184 1.8e-59 1 No_clan I 2 184 2   
LTV Family P34078_360-405 4.9e-09 1 No_clan j 360 405   
RIBIOP_C Family Q07381_486-779 1.4e-106 1 CL0575 k 486 779 2   
RIO1 Family P40160_108-293 3.3e-34 1 CL0016 l 109 293 2   
Ribosomal_S17_N Family P0CX47_8-71 6.6e-32 1 No_clan L 8 71 2   
Ribosomal_S11 Family P06367_15-129 3.2e-46 1 CL0267 O 15 133 2   
Ribosomal_S9 Family P0CX51_11-129 9.9e-26 1 CL0329 Q 11 129 2   
Ribosomal_S17e Family P02407_2-126 6e-55 1 No_clan R 2 122 2   
Ribosomal_S13 Family P0CX55_16-136 1e-51 1 CL0303 S 16 136 2   
Ribosomal_S19e Family P07280_5-142 8.8e-54 1 CL0123 T 5 142 2   
Ribosomal_S10 Family P38701_23-117 5.8e-25 1 No_clan U 23 117 2   
Ribosomal_S21e Family P0C0V8_1-80 5.8e-40 1 No_clan V 1 80 2   
Ribosom_S12_S23 Family P0CX29_31-144 2.1e-51 1 CL0021 X 31 144 2   
Ribosomal_S24e Family P0CX31_24-102 6.5e-35 1 No_clan Y 24 102 2   
Ribosomal_S25 Family Q3E792_42-104 1.3e-24 1 CL0123 Z 42 104 2   
WD40 Repeat P38011_8-46 3e-07 1 CL0186 g 55 93 2   
WD40 Repeat P38011_280-314 1.8e-06 1 CL0186 g 186 224 2   
WD40 Repeat P38011_280-314 9e-06 1 CL0186 g 97 135 2   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6fai.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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i (protein): 
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J (protein): 
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k (protein): 
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l (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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2 (rna): 
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