General information
PDB ID 6FAI
Title STRUCTURE OF A EUKARYOTIC CYTOPLASMIC PRE-40S RIBOSOMAL SUBUNIT
PDB header RIBOSOME
Date 2017-12-15
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.4
Kind rna
Organism
Download
complex 		View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6fai.pdb bcdeghijklABCDEFGHIJLMNOPQRSTUVWXYZ 2 0
Biounits:
6fai.pdb1.pdb bcdeghijklABCDEFGHIJLMNOPQRSTUVWXYZ 2 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S5 Domain P25443_76-140 1.1e-26 1 CL0196 C 76 140 2   
Ribosomal_S5_C Domain P25443_159-230 4.8e-24 1 CL0329 C 159 230 2   
Ribosomal_S3_C Domain P05750_105-188 1e-22 1 No_clan D 105 188   
KH_2 Domain P05750_20-96 0.000000000018 1 CL0007 D 20 96 2   
RS4NT Domain P0CX35_3-39 1.5e-19 1 No_clan E 3 39 2   
S4 Domain P0CX35_42-90 0.000000016 1 CL0492 E 42 90 2   
Ribosomal_S7 Domain P26783_76-225 4.4e-37 1 No_clan F 72 225 2   
S4 Domain O13516_107-153 0.0000000000033 1 CL0492 J 107 153 2   
AARP2CN Domain Q07381_234-309 1.4e-21 1 No_clan k 234 335 2   
Rio2_N Domain P40160_8-91 2.9e-32 1 CL0123 l 8 91 2   
Ribosomal_S17 Domain P0CX47_73-141 6.6e-28 1 CL0021 L 73 141 2   
Ribosomal_L7Ae Domain P48589_26-123 1.2e-22 1 CL0101 M 26 123 2   
Ribosomal_S13_N Domain P05756_2-60 8.1e-28 1 No_clan N 2 60 2   
Ribosomal_S15 Domain P05756_70-148 0.0000000000000032 1 CL0600 N 70 149 2   
Ribosomal_S19 Domain Q01855_43-128 2e-32 1 No_clan P 43 128 2   
Ribosomal_S8 Domain P0C0W1_5-130 5e-24 1 No_clan W 5 130 2   
Ribosomal_S2 Family P32905_111-183 0.000000000000029 1 CL0067 A 111 183 2   
Ribosomal_S2 Family P32905_17-116 0.00000000094 1 CL0067 A 17 116 2   
Ribosomal_S3Ae Family P33442_20-221 7.6e-88 1 No_clan B 20 221 2   
Ribosomal_S27e Family P35997_28-82 5e-30 1 CL0167 b 28 82 2   
Ribosomal_S28e Family Q3E7X9_5-66 1.2e-32 1 CL0021 c 5 66 2   
Ribosomal_S14 Family P41057_20-56 0.0000000000054 1 No_clan d 20 56 2   
Ribosomal_S4e Family P0CX35_95-169 2.1e-38 1 No_clan E 95 169 2   
40S_S4_C Family P0CX35_212-259 3.8e-26 1 No_clan E 212 259 2   
Ribosomal_S30 Family P0CX33_7-61 0.000000000033 1 No_clan e 11 61 2   
KOW Family P0CX35_177-211 0.0000038 1 CL0107 E 177 211 2   
Ribosomal_S6e Family P0CX37_1-126 6.4e-58 1 No_clan G 1 126 2   
Ribosomal_S7e Family P26786_5-187 6.2e-80 1 CL0652 H 5 187 2   
Bystin Family P38333_205-465 8.4e-117 1 No_clan i 205 466 2   
Ribosomal_S8e Family P0CX39_2-184 1.8e-59 1 No_clan I 2 184 2   
LTV Family P34078_360-405 0.0000000049 1 No_clan j 360 405   
RIBIOP_C Family Q07381_486-779 1.4e-106 1 CL0575 k 486 779 2   
RIO1 Family P40160_108-293 3.3e-34 1 CL0016 l 109 293 2   
Ribosomal_S17_N Family P0CX47_8-71 6.6e-32 1 No_clan L 8 71 2   
Ribosomal_S11 Family P06367_15-129 3.2e-46 1 CL0267 O 15 133 2   
Ribosomal_S9 Family P0CX51_11-129 9.9e-26 1 CL0329 Q 11 129 2   
Ribosomal_S17e Family P02407_2-126 6e-55 1 No_clan R 2 122 2   
Ribosomal_S13 Family P0CX55_16-136 1e-51 1 CL0303 S 16 136 2   
Ribosomal_S19e Family P07280_5-142 8.8e-54 1 CL0123 T 5 142 2   
Ribosomal_S10 Family P38701_23-117 5.8e-25 1 No_clan U 23 117 2   
Ribosomal_S21e Family P0C0V8_1-80 5.8e-40 1 No_clan V 1 80 2   
Ribosom_S12_S23 Family P0CX29_31-144 2.1e-51 1 CL0021 X 31 144 2   
Ribosomal_S24e Family P0CX31_24-102 6.5e-35 1 No_clan Y 24 102 2   
Ribosomal_S25 Family Q3E792_42-104 1.3e-24 1 CL0123 Z 42 104 2   
WD40 Repeat P38011_8-46 0.0000003 1 CL0186 g 55 93 2   
WD40 Repeat P38011_280-314 0.0000018 1 CL0186 g 186 224 2   
WD40 Repeat P38011_280-314 0.000009 1 CL0186 g 97 135 2   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6fai.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
C (protein): 
Click "SHOW" for view sequence
D (protein): 
Click "SHOW" for view sequence
E (protein): 
Click "SHOW" for view sequence
F (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
H (protein): 
Click "SHOW" for view sequence
i (protein): 
Click "SHOW" for view sequence
J (protein): 
Click "SHOW" for view sequence
k (protein): 
Click "SHOW" for view sequence
l (protein): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
P (protein): 
Click "SHOW" for view sequence
Q (protein): 
Click "SHOW" for view sequence
R (protein): 
Click "SHOW" for view sequence
S (protein): 
Click "SHOW" for view sequence
T (protein): 
Click "SHOW" for view sequence
U (protein): 
Click "SHOW" for view sequence
V (protein): 
Click "SHOW" for view sequence
W (protein): 
Click "SHOW" for view sequence
X (protein): 
Click "SHOW" for view sequence
Y (protein): 
Click "SHOW" for view sequence
Z (protein): 
Click "SHOW" for view sequence
2 (rna): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text