General information
PDB ID 6ASD
Title ZINC FINGER REGION OF HUMAN TET1 IN COMPLEX WITH CPG DNA
PDB header DNA BINDING PROTEIN/DNA
Date 2017-08-24
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.85
Kind dna
Organism SYNTHETIC CONSTRUCT, HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6asd.pdb C AB 0
Biounits:
6asd.pdb1.pdb C AB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-CXXC Domain Q8NFU7_587-624 5.9e-10 1 No_clan C 586 624 AB  H-Bb L-Bb L-Mj L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
C=587-632 C nucleus
C=587-632 F DNA binding
C=587-632 F iron ion binding
C=587-632 F methyl-CpG binding
C=587-632 F methylcytosine dioxygenase activity
C=587-632 F zinc ion binding
C=587-632 P 5-methylcytosine catabolic process
C=587-632 P chromatin organization
C=587-632 P DNA demethylation
C=587-632 P inner cell mass cell differentiation
C=587-632 P negative regulation of DNA methylation-dependent heterochromatin assembly
C=587-632 P oxidative demethylation
C=587-632 P positive regulation of cell population proliferation
C=587-632 P positive regulation of histone methylation
C=587-632 P positive regulation of transcription by RNA polymerase II
C=587-632 P protein O-linked glycosylation
C=587-632 P stem cell population maintenance
Sequences
Download file with secondary structure created by Stride  
6asd.pdb1.pdb:   [ download sequences in FASTA format ]
A (dna): 
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B (dna): 
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C (protein): 
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