General information
PDB ID 6BK8
Title S. CEREVISIAE SPLICEOSOMAL POST-CATALYTIC P COMPLEX
PDB header RNA BINDING PROTEIN
Date 2017-11-07
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.3
Kind rna
Organism SACCHAROMYCES CEREVISIAE
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6bk8.pdb ABDEFGHIKLMNOPRSTUXYabcdfghklmnopqrsuvwxy 256ei 0
Biounits:
6bk8.pdb1.pdb ABDEFGHIKLMNOPRSTUXYabcdfghklmnopqrsuvwxy 256ei 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PROCN Domain P33334_470-874 1.8e-218 1 No_clan A 470 874 256e   
PRP8_domainIV Domain P33334_1832-2061 1.4e-121 1 No_clan A 1832 2061 26i   
U6-snRNA_bdg Domain P33334_1514-1672 2.5e-85 1 CL0363 A 1514 1672 6ei2   
PRO8NT Domain P33334_131-282 2.3e-79 1 No_clan A 131 282 56   
U5_2-snRNA_bdg Domain P33334_1282-1415 3.3e-69 1 No_clan A 1282 1415 e   
RRM_4 Domain P33334_1059-1150 2.6e-47 1 No_clan A 1059 1150 2   
LSM Domain Q06217_37-106 1e-17 1 CL0527 a 37 106 5   
GTP_EFTU Domain P36048_131-442 3.1e-36 1 CL0023 B 131 443 5   
LSM Domain P54999_17-83 1.8e-19 1 CL0527 b 17 83 5   
GTP_EFTU_D2 Domain P36048_481-578 1.1e-16 1 CL0575 B 481 578   
EFG_C Domain P36048_856-948 1.3e-14 1 CL0437 B 856 948   
EFG_IV Domain P36048_738-854 1e-10 1 CL0329 B 738 854   
LSM Domain Q12330_19-92 2e-16 1 CL0527 c 19 92 5   
LSM Domain P40204_5-73 3.6e-16 1 CL0527 d 5 73 5   
LSM Domain P40018_10-97 2.1e-22 1 CL0527 f 10 97 56   
Torus Domain Q12046_4-114 4.8e-33 1 CL0537 G 4 114 56   
LSM Domain P43321_9-74 2.1e-16 1 CL0527 g 9 74 56   
RRM_1 Domain Q12046_149-206 3.5e-06 1 CL0221 G 149 206 6i   
LSM Domain Q02260_5-97 6.1e-27 1 CL0527 h 5 97 256   
G10 Domain P25337_1-155 4e-63 1 No_clan I 2 155 56   
LSM Domain P40018_10-97 1.9e-22 1 CL0527 k 10 97 25   
cwf21 Domain Q03375_66-109 1.4e-14 1 No_clan K 66 109 2   
LSM Domain Q12330_19-92 2e-16 1 CL0527 l 19 92   
LSM Domain P54999_17-83 1.8e-19 1 CL0527 m 17 83 6   
LSM Domain P40204_5-73 3.6e-16 1 CL0527 n 5 73   
LSM Domain P43321_9-74 8e-14 1 CL0527 o 9 74   
Slu7 Domain 3.1e-12 1 No_clan O 191 347 i
zf-CCHC Domain 0.00017 1 CL0511 O 106 137
Slu7 Domain 0.00057 0 No_clan O 165 245
LSM Domain Q02260_5-97 5.4e-27 1 CL0527 p 5 97   
HA2 Domain P24384_875-963 6.6e-22 1 No_clan P 875 963   
OB_NTP_bind Domain P24384_1021-1099 5.5e-18 1 CL0021 P 1021 1099 e   
AAA_22 Domain 0.00011 0 CL0023 P 495 634
LSM Domain Q06217_37-106 9.8e-18 1 CL0527 q 37 106   
RRM_5 Domain P40567_29-110 5.3e-10 1 CL0221 r 28 110 26   
SYF2 Domain P53277_92-211 6.2e-06 1 No_clan R 93 212 26   
Myb_DNA-binding Domain Q03654_10-56 1.3e-12 1 CL0123 S 10 56 2   
Myb_DNA-bind_6 Domain 1.4e-07 1 CL0123 S 65 136
Prp19 Domain P32523_77-139 9.3e-24 1 No_clan u 48 171   
U-box Domain 0.00072 0 CL0229 u 1 90
Prp19 Domain P32523_77-139 6.3e-26 1 No_clan v 49 139   
U-box Domain 6.6e-05 1 CL0229 v 1 88
Prp19 Domain P32523_77-139 3e-23 1 No_clan w 48 139   
U-box Domain 4.8e-05 1 CL0229 w 1 94
Prp19 Domain P32523_77-139 5.8e-26 1 No_clan x 51 139   
U-box Domain 0.00011 1 CL0229 x 1 83
SKIP_SNW Family P28004_90-225 1.4e-26 1 No_clan E 87 228 256   
Cwf_Cwc_15 Family 1e-06 0 No_clan H 2 133 256
Cwf_Cwc_15 Family 8.6e-05 0 No_clan H 128 175
MA3 Family P53333_291-398 5e-26 1 CL0020 L 291 398   
Prp18 Family P33411_114-246 7.1e-37 1 No_clan N 114 246 i   
Helicase_C Family P24384_673-813 5.5e-13 1 CL0023 P 673 813 e   
HAT Family Q12309_180-211 9.9e-07 1 CL0020 T 180 211   
WD40 Repeat Q12417_172-210 1.6e-05 1 CL0186 D 214 252 6   
WD40 Repeat 3.4e-05 1 CL0186 D 129 168
WD40 Repeat Q12417_172-210 0.00029 1 CL0186 D 172 210   
WD40 Repeat Q12417_172-210 0.00064 1 CL0186 D 256 294   
WD40 Repeat P40968_155-191 9e-07 1 CL0186 M 283 321   
WD40 Repeat P40968_155-191 2.5e-06 1 CL0186 M 196 234   
WD40 Repeat P40968_155-191 8.3e-05 1 CL0186 M 75 191   
LRR_9 Repeat Q08963_33-167 7.3e-13 1 CL0022 s 35 167 62   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6bk8.pdb1.pdb:   [ download sequences in FASTA format ]
a (protein): 
Click "SHOW" for view sequence
b (protein): 
Click "SHOW" for view sequence
c (protein): 
Click "SHOW" for view sequence
d (protein): 
Click "SHOW" for view sequence
f (protein): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
h (protein): 
Click "SHOW" for view sequence
I (protein): 
Click "SHOW" for view sequence
k (protein): 
Click "SHOW" for view sequence
l (protein): 
Click "SHOW" for view sequence
M (protein): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
O (protein): 
Click "SHOW" for view sequence
p (protein): 
Click "SHOW" for view sequence
q (protein): 
Click "SHOW" for view sequence
R (protein): 
Click "SHOW" for view sequence
s (protein): 
Click "SHOW" for view sequence
T (protein): 
Click "SHOW" for view sequence
U (protein): 
Click "SHOW" for view sequence
v (protein): 
Click "SHOW" for view sequence
w (protein): 
Click "SHOW" for view sequence
x (protein): 
Click "SHOW" for view sequence
y (protein): 
Click "SHOW" for view sequence
2 (rna): 
Click "SHOW" for view sequence
5 (rna): 
Click "SHOW" for view sequence
6 (rna): 
Click "SHOW" for view sequence
e (rna): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2019

text