General information
PDB ID 6BKG
Title HUMAN LIGIV CATALYTIC DOMAIN WITH BOUND DNA-ADENYLATE INTERMEDIATE IN CLOSED CONFORMATION
PDB header LIGASE/DNA
Date 2017-11-08
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.4
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6bkg.pdb A PTD 0
Biounits:
6bkg.pdb1.pdb A PTD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_ligase_A_M Domain P49917_248-451 7.2e-56 1 CL0078 A 248 451 DPT  S-Bb L-Bb L-Mn 
DNA_ligase_A_N Family P49917_15-208 1.8e-42 1 No_clan A 15 208 PT  H-Bb L-Bb 
DNA_ligase_A_C Family P49917_476-588 7.2e-16 1 CL0021 A 476 588 DTP  H-Bb H-Mn S-Bb S-Mn L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-620 C condensed chromosome
A=1-620 C cytoplasmic ribonucleoprotein granule
A=1-620 C DNA ligase IV complex
A=1-620 C DNA-dependent protein kinase-DNA ligase 4 complex
A=1-620 C nonhomologous end joining complex
A=1-620 C nuclear chromosome, telomeric region
A=1-620 C nucleoplasm
A=1-620 C nucleus
A=1-620 F ATP binding
A=1-620 F DNA binding
A=1-620 F DNA ligase (ATP) activity
A=1-620 F DNA ligase activity
A=1-620 F ligase activity
A=1-620 F metal ion binding
A=1-620 F protein C-terminus binding
A=1-620 P cell cycle
A=1-620 P cell division
A=1-620 P cell population proliferation
A=1-620 P cellular response to ionizing radiation
A=1-620 P cellular response to lithium ion
A=1-620 P central nervous system development
A=1-620 P chromosome organization
A=1-620 P DNA biosynthetic process
A=1-620 P DNA ligation
A=1-620 P DNA ligation involved in DNA recombination
A=1-620 P DNA ligation involved in DNA repair
A=1-620 P DNA replication
A=1-620 P double-strand break repair
A=1-620 P double-strand break repair via classical nonhomologous end joining
A=1-620 P double-strand break repair via nonhomologous end joining
A=1-620 P establishment of integrated proviral latency
A=1-620 P immunoglobulin V(D)J recombination
A=1-620 P in utero embryonic development
A=1-620 P isotype switching
A=1-620 P negative regulation of neuron apoptotic process
A=1-620 P neuron apoptotic process
A=1-620 P nucleotide-excision repair, DNA gap filling
A=1-620 P positive regulation of chromosome organization
A=1-620 P positive regulation of fibroblast proliferation
A=1-620 P positive regulation of neurogenesis
A=1-620 P pro-B cell differentiation
A=1-620 P response to gamma radiation
A=1-620 P response to X-ray
A=1-620 P single strand break repair
A=1-620 P somatic stem cell population maintenance
A=1-620 P T cell differentiation in thymus
A=1-620 P T cell receptor V(D)J recombination
A=1-620 P V(D)J recombination
Sequences
Download file with secondary structure created by Stride  
6bkg.pdb1.pdb:   [ download sequences in FASTA format ]
D (dna): 
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P (dna): 
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T (dna): 
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A (protein): 
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