General information
PDB ID 6BM4
Title POL II ELONGATION COMPLEX WITH AN ABASIC LESION AT I-1 POSITION, SOAKING UMPNPP
PDB header TRANSCRIPTION
Date 2017-11-13
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.95
Kind hybrid
Organism SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6bm4.pdb ABCEFHIJKL T R 0
Biounits:
6bm4.pdb1.pdb ABCEFHIJKL T R 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_Rpb1_1 Domain P04050_11-340 2.8e-104 1 No_clan A 11 340 T   
RNA_pol_Rpb1_5 Domain P04050_807-1397 1.4e-91 1 No_clan A 807 1397 T   
RNA_pol_Rpb1_2 Domain P04050_342-507 1.6e-77 1 No_clan A 342 507 RT   
RNA_pol_Rpb1_6 Domain P04050_873-1056 2.3e-63 1 No_clan A 873 1056   
RNA_pol_Rpb1_3 Domain P04050_510-669 7.5e-47 1 No_clan A 510 669   
RNA_pol_Rpb1_7 Domain P04050_1141-1274 1.5e-36 1 No_clan A 1141 1274   
RNA_pol_Rpb1_4 Domain P04050_693-800 5.1e-35 1 No_clan A 693 800   
RNA_pol_Rpb2_6 Domain P08518_752-1124 1.2e-123 1 CL0410 B 752 1124 RT   
RNA_pol_Rpb2_2 Domain P08518_219-407 3e-50 1 No_clan B 219 407   
RNA_pol_Rpb2_7 Domain P08518_1126-1219 1.6e-33 1 No_clan B 1126 1219 T   
RNA_pol_Rpb2_4 Domain P08518_580-641 1.5e-25 1 No_clan B 580 641   
RNA_pol_Rpb2_3 Domain P08518_481-545 3.1e-20 1 No_clan B 481 545 T   
RNA_pol_Rpb2_5 Domain P08518_681-745 2.9e-19 1 No_clan B 681 745   
RNA_pol_A_bac Domain P16370_49-171 7.3e-32 1 No_clan C 49 171   
RNA_pol_L Domain P16370_19-255 6.6e-19 1 CL0509 C 19 255   
RNA_pol_Rpb5_C Domain P20434_142-214 1.5e-31 1 No_clan E 142 214   
RNA_pol_Rpb5_N Domain P20434_6-100 1.1e-29 1 CL0236 E 6 100   
RNA_POL_M_15KD Domain P27999_4-41 1.2e-17 1 CL0167 I 4 41   
TFIIS_C Domain P27999_73-111 1.2e-14 1 CL0167 I 73 111   
RNA_pol_N Domain P22139_1-60 5.4e-30 1 No_clan J 1 60   
RNA_pol_L_2 Domain P38902_30-104 1.6e-24 1 CL0509 K 30 104   
DNA_RNApol_7kD Domain P40422_29-60 1.7e-16 1 CL0167 L 29 60   
RNA_pol_Rpb2_1 Family P08518_42-455 9.3e-56 1 No_clan B 42 460   
RNA_pol_Rpb6 Family P20435_79-132 7.3e-18 1 No_clan F 79 132   
RNA_pol_Rpb8 Family P20436_7-146 2.8e-39 1 CL0021 H 7 146   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6bm4.pdb1.pdb:   [ download sequences in FASTA format ]
T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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E (protein): 
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F (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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R (rna): 
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