General information
PDB ID 6BS1
Title CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE KAPPA IN COMPLEX WITH DNA CONTAINING THE MAJOR CISPLATIN LESION
PDB header REPLICATION
Date 2017-12-01
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.15
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6bs1.pdb AB CDPT 0
Biounits:
6bs1.pdb1.pdb A CD 1
6bs1.pdb2.pdb B PT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
IMS_C Domain Q9UBT6_413-517 2.5e-14 1 No_clan A 413 518 CD  S-Bb S-Mj L-Bb 
IMS_C Domain Q9UBT6_413-517 2.5e-14 1 No_clan B 413 518 PT  S-Bb L-Bb 
IMS Family Q9UBT6_106-325 1.4e-45 1 No_clan A 106 325 CD  H-Bb S-Bb L-Bb 
IMS Family Q9UBT6_106-325 1.4e-45 1 No_clan B 106 325 PT  H-Bb S-Bb L-Bb 
IMS_HHH Motif Q9UBT6_339-370 5.1e-07 1 CL0198 A 339 370 C  H-Bb L-Bb 
IMS_HHH Motif Q9UBT6_339-370 5.1e-07 1 CL0198 B 339 370 P  H-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-526 C nuclear body
A/B=1-526 C nucleoplasm
A/B=1-526 C nucleus
A/B=1-526 F damaged DNA binding
A/B=1-526 F DNA-directed DNA polymerase activity
A/B=1-526 F metal ion binding
A/B=1-526 P cellular response to DNA damage stimulus
A/B=1-526 P cellular response to UV
A/B=1-526 P DNA repair
A/B=1-526 P DNA replication
A/B=1-526 P error-prone translesion synthesis
A/B=1-526 P nucleotide-excision repair, DNA gap filling
A/B=1-526 P nucleotide-excision repair, DNA incision
A/B=1-526 P nucleotide-excision repair, DNA incision, 5'-to lesion
A/B=1-526 P transcription-coupled nucleotide-excision repair
A/B=1-526 P translesion synthesis
Sequences
Download file with secondary structure created by Stride  
6bs1.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
6bs1.pdb2.pdb:   [ download sequences in FASTA format ]
P (dna): 
Click "SHOW" for view sequence
T (dna): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text